Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Rasl10b-203ENSMUST00000164425 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Sox9Q04887 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Gm7666-201ENSMUST00000146631 819 ntBASIC13.28□□□□□ -0.28
Sox9Q04887 Aamdc-213ENSMUST00000154853 883 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Slc2a4rg-ps-202ENSMUST00000176590 1143 ntBASIC13.28□□□□□ -0.28
Sox9Q04887 Gm9358-201ENSMUST00000183067 927 ntBASIC13.28□□□□□ -0.28
Sox9Q04887 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC13.28□□□□□ -0.28
Sox9Q04887 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Gm43416-201ENSMUST00000201916 1015 ntBASIC13.28□□□□□ -0.28
Sox9Q04887 Gm45598-202ENSMUST00000210719 986 ntBASIC13.28□□□□□ -0.28
Sox9Q04887 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC13.28□□□□□ -0.28
Sox9Q04887 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
Sox9Q04887 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Gm35721-201ENSMUST00000220294 2014 ntTSL 5 BASIC13.28□□□□□ -0.28
Sox9Q04887 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Sox9Q04887 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC13.28□□□□□ -0.28
Sox9Q04887 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Sox9Q04887 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Inpp4a-209ENSMUST00000140264 3676 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Rad9a-201ENSMUST00000025740 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Sox9Q04887 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Sox9Q04887 Gm15711-201ENSMUST00000118889 535 ntBASIC13.27□□□□□ -0.29
Sox9Q04887 Gm13736-201ENSMUST00000119272 253 ntBASIC13.27□□□□□ -0.29
Sox9Q04887 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC13.27□□□□□ -0.29
Sox9Q04887 4930483J18Rik-202ENSMUST00000138715 1093 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.27□□□□□ -0.29
Sox9Q04887 Gm6254-201ENSMUST00000168178 1072 ntBASIC13.27□□□□□ -0.29
Sox9Q04887 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
Sox9Q04887 Ccdc12-201ENSMUST00000019803 834 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Gm19287-201ENSMUST00000203190 358 ntBASIC13.27□□□□□ -0.29
Sox9Q04887 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC13.27□□□□□ -0.29
Sox9Q04887 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Gm45550-201ENSMUST00000209380 946 ntBASIC13.27□□□□□ -0.29
Sox9Q04887 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
Sox9Q04887 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Sox9Q04887 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Fam170a-201ENSMUST00000039121 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Sox9Q04887 Gm9947-201ENSMUST00000067599 2920 ntBASIC13.27□□□□□ -0.29
Sox9Q04887 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Sox9Q04887 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Arhgef1-202ENSMUST00000098683 3375 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Tmem9-201ENSMUST00000063719 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Gna13-201ENSMUST00000020930 6160 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC13.27□□□□□ -0.29
Sox9Q04887 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Sox9Q04887 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
Sox9Q04887 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Sox9Q04887 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Gm23949-201ENSMUST00000104027 127 ntBASIC13.26□□□□□ -0.29
Sox9Q04887 Gm25880-201ENSMUST00000104331 132 ntBASIC13.26□□□□□ -0.29
Sox9Q04887 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC13.26□□□□□ -0.29
Sox9Q04887 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Sox9Q04887 Gm12015-201ENSMUST00000117065 843 ntBASIC13.26□□□□□ -0.29
Sox9Q04887 Gm6039-201ENSMUST00000121667 1250 ntBASIC13.26□□□□□ -0.29
Sox9Q04887 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC13.26□□□□□ -0.29
Sox9Q04887 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC13.26□□□□□ -0.29
Sox9Q04887 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
Sox9Q04887 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC13.26□□□□□ -0.29
Sox9Q04887 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Sox9Q04887 Gm44487-201ENSMUST00000205145 325 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 63.7 ms