Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Olfr322-202ENSMUST00000213232 4632 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col8a1Q00780 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC11□□□□□ -0.65
Col8a1Q00780 Gm4366-201ENSMUST00000201488 1342 ntBASIC11□□□□□ -0.65
Col8a1Q00780 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Irf7-203ENSMUST00000106023 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col8a1Q00780 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 B230319C09Rik-201ENSMUST00000063376 1689 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Angptl7-201ENSMUST00000030840 2157 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Dynlrb1-202ENSMUST00000109682 684 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Zar1l-201ENSMUST00000118769 895 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Gm14109-201ENSMUST00000118814 309 ntBASIC10.99□□□□□ -0.65
Col8a1Q00780 Map2k3os-201ENSMUST00000123544 1291 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC10.99□□□□□ -0.65
Col8a1Q00780 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Gm27552-201ENSMUST00000183351 62 ntBASIC10.99□□□□□ -0.65
Col8a1Q00780 Gm27844-201ENSMUST00000183613 62 ntBASIC10.99□□□□□ -0.65
Col8a1Q00780 Gm45224-201ENSMUST00000208203 414 ntBASIC10.99□□□□□ -0.65
Col8a1Q00780 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Cdc14a-202ENSMUST00000106491 4292 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC10.99□□□□□ -0.65
Col8a1Q00780 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Col8a1Q00780 B3gnt3-201ENSMUST00000034260 3055 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Spock1-205ENSMUST00000187852 3113 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Pex2-202ENSMUST00000071280 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Crhr2-201ENSMUST00000003568 2695 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Ky-201ENSMUST00000039390 5837 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Tcf4-253ENSMUST00000202610 1959 ntTSL 5 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm13875-201ENSMUST00000120162 282 ntBASIC10.98□□□□□ -0.65
Col8a1Q00780 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Dnajc25-204ENSMUST00000152199 1141 ntTSL 5 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm19459-201ENSMUST00000176240 835 ntBASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm8856-201ENSMUST00000185254 1144 ntBASIC10.98□□□□□ -0.65
Col8a1Q00780 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm43058-201ENSMUST00000197645 625 ntBASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm44405-201ENSMUST00000198952 126 ntBASIC10.98□□□□□ -0.65
Col8a1Q00780 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 AC122876.1-201ENSMUST00000217619 825 ntBASIC10.98□□□□□ -0.65
Col8a1Q00780 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC10.98□□□□□ -0.65
Col8a1Q00780 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Olfm1-202ENSMUST00000100244 2686 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Col8a1Q00780 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 73.7 ms