Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.19□□□□□ -0.3
Cxcl12P40224 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Cxcl12P40224 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Cacna1g-206ENSMUST00000107788 8050 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Cacna1g-211ENSMUST00000107793 8071 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.18□□□□□ -0.3
Cxcl12P40224 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Gm5124-201ENSMUST00000127554 1970 ntTSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Ace-202ENSMUST00000001964 2418 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Gm16296-201ENSMUST00000159905 325 ntBASIC13.18□□□□□ -0.3
Cxcl12P40224 Gm28324-201ENSMUST00000187913 264 ntBASIC13.18□□□□□ -0.3
Cxcl12P40224 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 AC132901.1-201ENSMUST00000224345 508 ntBASIC13.18□□□□□ -0.3
Cxcl12P40224 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Strip2-201ENSMUST00000046028 5370 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Phka2-202ENSMUST00000112376 2310 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.18□□□□□ -0.3
Cxcl12P40224 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Frmpd4-204ENSMUST00000112149 8456 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Cxcl12P40224 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Cxcl12P40224 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Gm37133-201ENSMUST00000192705 1922 ntBASIC13.17□□□□□ -0.3
Cxcl12P40224 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC13.17□□□□□ -0.3
Cxcl12P40224 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Gm25951-201ENSMUST00000175330 64 ntBASIC13.17□□□□□ -0.3
Cxcl12P40224 Mir7221-201ENSMUST00000184009 72 ntBASIC13.17□□□□□ -0.3
Cxcl12P40224 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Gm35822-201ENSMUST00000204954 562 ntTSL 3 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Gm39404-201ENSMUST00000216350 313 ntBASIC13.17□□□□□ -0.3
Cxcl12P40224 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 2010300F17Rik-202ENSMUST00000181758 2493 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC13.17□□□□□ -0.3
Cxcl12P40224 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Cxcl12P40224 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cxcl12P40224 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cxcl12P40224 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cxcl12P40224 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cxcl12P40224 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Cxcl12P40224 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms