Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Cep128-210ENSMUST00000141429 4807 ntAPPRIS P2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Tmem129-201ENSMUST00000019439 2828 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
Sdc1P18828 Tpra1-219ENSMUST00000203345 3359 ntTSL 5 BASIC10.52□□□□□ -0.72
Sdc1P18828 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
Sdc1P18828 Gm2420-201ENSMUST00000119864 2149 ntBASIC10.52□□□□□ -0.72
Sdc1P18828 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Sdc1P18828 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.72
Sdc1P18828 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC10.52□□□□□ -0.72
Sdc1P18828 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
Sdc1P18828 Tmem176b-203ENSMUST00000166247 1414 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Lrrc10-201ENSMUST00000073834 1428 ntAPPRIS P1 BASIC10.52□□□□□ -0.73
Sdc1P18828 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
Sdc1P18828 Slc9a1-201ENSMUST00000030669 4676 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Gm38037-201ENSMUST00000192600 1624 ntBASIC10.52□□□□□ -0.73
Sdc1P18828 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC10.52□□□□□ -0.73
Sdc1P18828 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.73
Sdc1P18828 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC10.52□□□□□ -0.73
Sdc1P18828 Gm24420-201ENSMUST00000176676 59 ntBASIC10.52□□□□□ -0.73
Sdc1P18828 Gm26830-201ENSMUST00000180389 993 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Gm17968-201ENSMUST00000194902 784 ntBASIC10.52□□□□□ -0.73
Sdc1P18828 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC10.52□□□□□ -0.73
Sdc1P18828 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC10.52□□□□□ -0.73
Sdc1P18828 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC10.52□□□□□ -0.73
Sdc1P18828 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Palld-202ENSMUST00000121200 4193 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC10.52□□□□□ -0.73
Sdc1P18828 Slc46a2-201ENSMUST00000030081 2833 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
Sdc1P18828 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC10.51□□□□□ -0.73
Sdc1P18828 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Acsm1-201ENSMUST00000047929 2083 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC10.51□□□□□ -0.73
Sdc1P18828 Myo18a-205ENSMUST00000100794 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC10.51□□□□□ -0.73
Sdc1P18828 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Frmpd2-203ENSMUST00000208577 5192 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Sdc1P18828 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Hsf4-203ENSMUST00000172525 1276 ntTSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Gm9630-201ENSMUST00000178304 885 ntBASIC10.51□□□□□ -0.73
Sdc1P18828 Gm27459-201ENSMUST00000184860 107 ntBASIC10.51□□□□□ -0.73
Sdc1P18828 Gm38225-201ENSMUST00000194001 393 ntBASIC10.51□□□□□ -0.73
Sdc1P18828 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Arhgap29-201ENSMUST00000037958 5787 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC10.51□□□□□ -0.73
Sdc1P18828 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Grin1-206ENSMUST00000114314 3882 ntTSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
Sdc1P18828 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC10.51□□□□□ -0.73
Sdc1P18828 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC10.51□□□□□ -0.73
Sdc1P18828 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
Sdc1P18828 Rbm6-201ENSMUST00000035201 3999 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC10.5□□□□□ -0.73
Sdc1P18828 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC10.5□□□□□ -0.73
Sdc1P18828 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC10.5□□□□□ -0.73
Sdc1P18828 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC10.5□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 33.8 ms