Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Gm29705-201ENSMUST00000212598 474 ntBASIC12.56□□□□□ -0.4
Clip3B9EHT4 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 AC131068.2-201ENSMUST00000226175 1453 ntBASIC12.56□□□□□ -0.4
Clip3B9EHT4 Gm42769-201ENSMUST00000198576 1659 ntBASIC12.56□□□□□ -0.4
Clip3B9EHT4 Saraf-201ENSMUST00000033933 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Abca7-203ENSMUST00000171637 6638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.56□□□□□ -0.4
Clip3B9EHT4 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
Clip3B9EHT4 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Ttc5-201ENSMUST00000006451 1842 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC12.55□□□□□ -0.4
Clip3B9EHT4 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Gm14350-201ENSMUST00000116642 640 ntBASIC12.55□□□□□ -0.4
Clip3B9EHT4 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Gm37753-201ENSMUST00000192178 439 ntTSL 2 BASIC12.55□□□□□ -0.4
Clip3B9EHT4 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Gm2420-202ENSMUST00000202224 2249 ntBASIC12.55□□□□□ -0.4
Clip3B9EHT4 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC12.55□□□□□ -0.4
Clip3B9EHT4 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Rps13-203ENSMUST00000205490 1317 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Hectd2-208ENSMUST00000169036 3842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Clip3B9EHT4 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Mutyh-201ENSMUST00000102699 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Epb41l2-207ENSMUST00000218903 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Mad2l2-203ENSMUST00000105707 949 ntTSL 3 BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Gm6447-201ENSMUST00000118905 835 ntBASIC12.54□□□□□ -0.4
Clip3B9EHT4 Gm14660-201ENSMUST00000119809 575 ntBASIC12.54□□□□□ -0.4
Clip3B9EHT4 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Gm2639-201ENSMUST00000156881 1297 ntBASIC12.54□□□□□ -0.4
Clip3B9EHT4 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Gm44985-201ENSMUST00000206202 1016 ntBASIC12.54□□□□□ -0.4
Clip3B9EHT4 Wfdc1-202ENSMUST00000212901 921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 CT573086.1-201ENSMUST00000227202 1074 ntBASIC12.54□□□□□ -0.4
Clip3B9EHT4 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Snap23-203ENSMUST00000116437 2730 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Clip3B9EHT4 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms