Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Lrrc41-201ENSMUST00000030471 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Hopx-202ENSMUST00000113453 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm14460-201ENSMUST00000121511 639 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Rpsa-ps4-201ENSMUST00000121691 888 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm11815-201ENSMUST00000139423 708 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm17391-201ENSMUST00000171036 126 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm43916-201ENSMUST00000205062 967 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm4607-201ENSMUST00000206649 577 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 AC159205.5-202ENSMUST00000224849 386 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Exoc6b-203ENSMUST00000160197 5439 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Nkx2-4Q9EQM3 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Tmed9-203ENSMUST00000224741 1450 ntBASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Rwdd4a-201ENSMUST00000033973 2921 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Micu1-202ENSMUST00000092508 2294 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Stpg4-202ENSMUST00000186211 591 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Gm21027-201ENSMUST00000219300 1236 ntBASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Nceh1-202ENSMUST00000091284 830 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 AC159308.2-201ENSMUST00000213592 2325 ntBASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC13.17□□□□□ -0.3
Nkx2-4Q9EQM3 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Smim14-205ENSMUST00000139122 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Nkx2-4Q9EQM3 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms