Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Retreg1-206ENSMUST00000228306 1430 ntBASIC16.64■□□□□ 0.25
Trim28Q62318 Klhl21-201ENSMUST00000097773 3986 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC16.64■□□□□ 0.25
Trim28Q62318 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Gm45691-201ENSMUST00000206905 1120 ntBASIC16.64■□□□□ 0.25
Trim28Q62318 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC16.64■□□□□ 0.25
Trim28Q62318 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Trim28Q62318 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim28Q62318 Emc3-201ENSMUST00000032425 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim28Q62318 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim28Q62318 Rhpn2-201ENSMUST00000032705 3508 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Trim28Q62318 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim28Q62318 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Trim28Q62318 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Eno3-206ENSMUST00000170716 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim28Q62318 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Trim28Q62318 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Gm23119-201ENSMUST00000158610 140 ntBASIC16.63■□□□□ 0.25
Trim28Q62318 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC16.63■□□□□ 0.25
Trim28Q62318 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Erg28-201ENSMUST00000021676 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Mir433-201ENSMUST00000093564 124 ntBASIC16.63■□□□□ 0.25
Trim28Q62318 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
Trim28Q62318 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 Rasd2-202ENSMUST00000139848 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim28Q62318 AC122197.2-201ENSMUST00000219196 1635 ntBASIC16.63■□□□□ 0.25
Trim28Q62318 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim28Q62318 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim28Q62318 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Pigg-203ENSMUST00000119014 4573 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Trim28Q62318 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC16.62■□□□□ 0.25
Trim28Q62318 Gm9022-201ENSMUST00000182482 992 ntBASIC16.62■□□□□ 0.25
Trim28Q62318 Gm37466-201ENSMUST00000195692 652 ntBASIC16.62■□□□□ 0.25
Trim28Q62318 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC16.62■□□□□ 0.25
Trim28Q62318 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Gm39822-201ENSMUST00000212253 2284 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim28Q62318 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim28Q62318 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Zkscan3-207ENSMUST00000223831 2101 ntBASIC16.61■□□□□ 0.25
Trim28Q62318 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim28Q62318 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Gm14644-201ENSMUST00000116671 647 ntBASIC16.61■□□□□ 0.25
Trim28Q62318 Gm14017-201ENSMUST00000121934 386 ntBASIC16.61■□□□□ 0.25
Trim28Q62318 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim28Q62318 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC16.61■□□□□ 0.25
Trim28Q62318 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Trim28Q62318 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Trim28Q62318 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms