Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Camk2d-202ENSMUST00000066466 4075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC11.74□□□□□ -0.53
Usf1Q61069 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Usf1Q61069 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Iqsec3-203ENSMUST00000151397 8067 ntTSL 2 BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm21451-201ENSMUST00000111062 2775 ntBASIC11.73□□□□□ -0.53
Usf1Q61069 1600014C10Rik-205ENSMUST00000178876 3283 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Taf6l-202ENSMUST00000010249 848 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Usf1Q61069 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm13736-201ENSMUST00000119272 253 ntBASIC11.73□□□□□ -0.53
Usf1Q61069 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm24749-201ENSMUST00000157838 343 ntBASIC11.73□□□□□ -0.53
Usf1Q61069 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC11.73□□□□□ -0.53
Usf1Q61069 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm9211-201ENSMUST00000182882 975 ntBASIC11.73□□□□□ -0.53
Usf1Q61069 Gm17767-201ENSMUST00000189410 1470 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm37019-201ENSMUST00000192133 2134 ntBASIC11.73□□□□□ -0.53
Usf1Q61069 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC11.73□□□□□ -0.53
Usf1Q61069 Gm45691-201ENSMUST00000206905 1120 ntBASIC11.73□□□□□ -0.53
Usf1Q61069 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC11.73□□□□□ -0.53
Usf1Q61069 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 4921530L21Rik-202ENSMUST00000228913 1115 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Usf1Q61069 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Abra-201ENSMUST00000054742 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Klk1b27-201ENSMUST00000079859 889 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Myh3-201ENSMUST00000007301 5992 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC11.73□□□□□ -0.53
Usf1Q61069 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Usf1Q61069 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Gm42872-201ENSMUST00000200026 1967 ntBASIC11.72□□□□□ -0.53
Usf1Q61069 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC11.72□□□□□ -0.53
Usf1Q61069 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Tfap2a-201ENSMUST00000021787 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Usf1Q61069 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC11.72□□□□□ -0.53
Usf1Q61069 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC11.72□□□□□ -0.53
Usf1Q61069 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC11.72□□□□□ -0.53
Usf1Q61069 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Usf1Q61069 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC11.72□□□□□ -0.53
Usf1Q61069 AC159263.1-201ENSMUST00000220746 482 ntTSL 5 BASIC11.72□□□□□ -0.53
Usf1Q61069 Spcs1-203ENSMUST00000226374 592 ntBASIC11.72□□□□□ -0.53
Usf1Q61069 AC131330.1-201ENSMUST00000227814 1015 ntBASIC11.72□□□□□ -0.53
Usf1Q61069 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Usf1Q61069 Gm28182-201ENSMUST00000188354 2477 ntBASIC11.72□□□□□ -0.53
Usf1Q61069 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC11.72□□□□□ -0.53
Usf1Q61069 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Ap2m1-201ENSMUST00000007216 2937 ntAPPRIS P3 TSL 5 BASIC11.72□□□□□ -0.53
Usf1Q61069 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Usf1Q61069 AC155298.2-201ENSMUST00000225485 6226 ntBASIC11.72□□□□□ -0.53
Usf1Q61069 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Usf1Q61069 Mcoln2-201ENSMUST00000011152 2520 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Usf1Q61069 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Usf1Q61069 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Usf1Q61069 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Usf1Q61069 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 74 ms