Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC13.31□□□□□ -0.28
Sox9Q04887 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC13.31□□□□□ -0.28
Sox9Q04887 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC13.31□□□□□ -0.28
Sox9Q04887 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Sox9Q04887 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
Sox9Q04887 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Sema6c-203ENSMUST00000107217 3595 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Sox9Q04887 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Sox9Q04887 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Asb18-201ENSMUST00000086882 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Art3-201ENSMUST00000113083 1561 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Apoo-202ENSMUST00000113896 1032 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC13.3□□□□□ -0.28
Sox9Q04887 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC13.3□□□□□ -0.28
Sox9Q04887 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC13.3□□□□□ -0.28
Sox9Q04887 Gm43273-201ENSMUST00000199649 2594 ntBASIC13.3□□□□□ -0.28
Sox9Q04887 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Axdnd1-204ENSMUST00000178036 3586 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 CT009713.10-201ENSMUST00000225013 1986 ntBASIC13.3□□□□□ -0.28
Sox9Q04887 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Ilvbl-203ENSMUST00000218215 2331 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC13.3□□□□□ -0.28
Sox9Q04887 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.3□□□□□ -0.28
Sox9Q04887 Stx5a-202ENSMUST00000073430 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Sox9Q04887 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Eif3j1-201ENSMUST00000028668 5413 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Adamts8-201ENSMUST00000068135 3631 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Rubie-203ENSMUST00000227803 2430 ntBASIC13.29□□□□□ -0.28
Sox9Q04887 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Gm12380-201ENSMUST00000119012 544 ntBASIC13.29□□□□□ -0.28
Sox9Q04887 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC13.29□□□□□ -0.28
Sox9Q04887 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Gm27627-201ENSMUST00000183644 150 ntBASIC13.29□□□□□ -0.28
Sox9Q04887 Gm38297-201ENSMUST00000195122 1057 ntBASIC13.29□□□□□ -0.28
Sox9Q04887 Gm38092-201ENSMUST00000195600 653 ntBASIC13.29□□□□□ -0.28
Sox9Q04887 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
Sox9Q04887 Gm5369-201ENSMUST00000217499 588 ntBASIC13.29□□□□□ -0.28
Sox9Q04887 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.29□□□□□ -0.28
Sox9Q04887 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Sat1-201ENSMUST00000026318 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Cux2-210ENSMUST00000168288 4697 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Kcnq2-208ENSMUST00000103051 4200 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Ank-201ENSMUST00000022875 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.29□□□□□ -0.28
Sox9Q04887 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Sox9Q04887 AC139350.1-201ENSMUST00000227064 1594 ntBASIC13.28□□□□□ -0.28
Sox9Q04887 Srrm1-202ENSMUST00000084846 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Sox9Q04887 Ick-203ENSMUST00000117330 2698 ntAPPRIS ALT2 TSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms