Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Gm37844-201ENSMUST00000192473 4097 ntBASIC11.02□□□□□ -0.65
Col8a1Q00780 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.65
Col8a1Q00780 Kdm5b-201ENSMUST00000047714 8714 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Pitpnb-201ENSMUST00000086635 2761 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.02□□□□□ -0.65
Col8a1Q00780 Tmem220-201ENSMUST00000061786 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.02□□□□□ -0.65
Col8a1Q00780 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 9030612E09Rik-201ENSMUST00000053792 1859 ntAPPRIS P1 BASIC11.02□□□□□ -0.65
Col8a1Q00780 Camk2b-203ENSMUST00000066431 1603 ntAPPRIS ALT1 TSL 5 BASIC11.02□□□□□ -0.65
Col8a1Q00780 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 AC164107.1-201ENSMUST00000227730 2161 ntBASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm12404-201ENSMUST00000122839 1661 ntTSL 5 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Chaf1a-201ENSMUST00000002914 3308 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Atp13a2-203ENSMUST00000127833 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Snord83b-201ENSMUST00000104546 94 ntBASIC11.01□□□□□ -0.65
Col8a1Q00780 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm12539-201ENSMUST00000121549 1098 ntBASIC11.01□□□□□ -0.65
Col8a1Q00780 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm15547-201ENSMUST00000122152 333 ntBASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm17135-201ENSMUST00000167009 564 ntTSL 3 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm28693-202ENSMUST00000190758 331 ntBASIC11.01□□□□□ -0.65
Col8a1Q00780 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Col8a1Q00780 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 AC161537.1-201ENSMUST00000226199 1015 ntBASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Clpb-202ENSMUST00000106998 2287 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Col8a1Q00780 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Sohlh2-201ENSMUST00000029369 2364 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col8a1Q00780 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Arhgap10-201ENSMUST00000076316 3084 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC11□□□□□ -0.65
Col8a1Q00780 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Syt10-201ENSMUST00000029441 1845 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Ulk3-201ENSMUST00000053230 2826 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col8a1Q00780 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Taf7l-201ENSMUST00000009740 1933 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Mindy3-201ENSMUST00000028105 2344 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col8a1Q00780 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Col8a1Q00780 Gm16481-201ENSMUST00000119074 1227 ntBASIC11□□□□□ -0.65
Col8a1Q00780 Gm12208-201ENSMUST00000122004 163 ntBASIC11□□□□□ -0.65
Col8a1Q00780 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11□□□□□ -0.65
Col8a1Q00780 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC11□□□□□ -0.65
Col8a1Q00780 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC11□□□□□ -0.65
Col8a1Q00780 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC11□□□□□ -0.65
Col8a1Q00780 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Col8a1Q00780 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11□□□□□ -0.65
Col8a1Q00780 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC11□□□□□ -0.65
Col8a1Q00780 Gm32025-201ENSMUST00000217960 307 ntBASIC11□□□□□ -0.65
Col8a1Q00780 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col8a1Q00780 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC11□□□□□ -0.65
Col8a1Q00780 2900005J15Rik-202ENSMUST00000171190 2025 ntBASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 66.5 ms