Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Alg10b-201ENSMUST00000100309 3727 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Jph3-201ENSMUST00000026357 3637 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 CT009713.10-201ENSMUST00000225013 1986 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Gm14704-201ENSMUST00000120300 874 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 Gm43068-201ENSMUST00000201095 1273 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Gm7619-201ENSMUST00000210649 1282 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Gm30238-201ENSMUST00000195528 2603 ntBASIC11.14□□□□□ -0.63
Nkx3-1P97436 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Kctd20-203ENSMUST00000118762 3839 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Prr33-201ENSMUST00000054910 2251 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC11.14□□□□□ -0.63
Nkx3-1P97436 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
Nkx3-1P97436 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Shmt2-206ENSMUST00000219239 2238 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 AC113441.2-201ENSMUST00000221538 1468 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm10782-202ENSMUST00000223775 1480 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Tfe3-211ENSMUST00000137467 3390 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Slc26a4-201ENSMUST00000001253 3075 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Sgms1-212ENSMUST00000151289 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm24830-201ENSMUST00000102024 166 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm25890-201ENSMUST00000177643 165 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Rnu1b2-201ENSMUST00000178073 165 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Rnu1b1-201ENSMUST00000178250 165 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm22614-201ENSMUST00000178300 165 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Mir7070-201ENSMUST00000183657 86 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Ighv8-10-201ENSMUST00000199579 358 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm18753-201ENSMUST00000201000 566 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm43416-201ENSMUST00000201916 1015 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 4933424G06Rik-204ENSMUST00000208994 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm22042-201ENSMUST00000082989 165 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm26232-201ENSMUST00000083360 166 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm24136-201ENSMUST00000083374 165 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Rnu1b6-201ENSMUST00000083839 166 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm26110-201ENSMUST00000083971 165 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Cog7-201ENSMUST00000057576 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Srr-204ENSMUST00000121738 3183 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Gm8228-201ENSMUST00000189949 2192 ntBASIC11.13□□□□□ -0.63
Nkx3-1P97436 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.13□□□□□ -0.63
Nkx3-1P97436 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 69.4 ms