Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Rfx3P48381 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Mir6392-201ENSMUST00000184924 108 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Gm7558-201ENSMUST00000193221 1165 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Gm37917-201ENSMUST00000194711 392 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC11.67□□□□□ -0.54
Rfx3P48381 Gm44985-201ENSMUST00000206202 1016 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 2810047C21Rik1-202ENSMUST00000210322 1179 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 AC140375.2-201ENSMUST00000225283 584 ntBASIC11.67□□□□□ -0.54
Rfx3P48381 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC11.67□□□□□ -0.54
Rfx3P48381 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Adam33-202ENSMUST00000110232 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Olfr648-202ENSMUST00000216612 2929 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Rfx3P48381 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
Rfx3P48381 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Rfx3P48381 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
Rfx3P48381 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Rfx3P48381 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Apaf1-207ENSMUST00000161987 2710 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Crx-203ENSMUST00000172758 1469 ntTSL 3 BASIC11.66□□□□□ -0.54
Rfx3P48381 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Hoxd10-201ENSMUST00000061745 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Gm12859-201ENSMUST00000117834 427 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 Gm13689-201ENSMUST00000119360 685 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 Gm6161-201ENSMUST00000121942 1102 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 Hnrnpa3-207ENSMUST00000164947 1074 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Rfx3P48381 Gm6254-201ENSMUST00000168178 1072 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 Gm6153-201ENSMUST00000172004 1058 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 Gm9242-201ENSMUST00000177820 1074 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Rfx3P48381 Gm5641-202ENSMUST00000198699 1080 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 Gm19931-201ENSMUST00000198920 368 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 CT573086.1-201ENSMUST00000227202 1074 ntBASIC11.66□□□□□ -0.54
Rfx3P48381 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC11.66□□□□□ -0.54
Rfx3P48381 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Slc25a25-201ENSMUST00000028160 3294 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.66□□□□□ -0.54
Rfx3P48381 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Rfx3P48381 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Rai1-207ENSMUST00000171108 7125 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Rfx3P48381 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Rfx3P48381 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC11.65□□□□□ -0.54
Rfx3P48381 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 CT009757.3-201ENSMUST00000223367 2320 ntBASIC11.65□□□□□ -0.54
Rfx3P48381 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Rfx3P48381 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Commd1-201ENSMUST00000057843 1459 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Gm19817-201ENSMUST00000199764 2132 ntBASIC11.65□□□□□ -0.54
Rfx3P48381 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.65□□□□□ -0.54
Rfx3P48381 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC11.65□□□□□ -0.54
Rfx3P48381 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Ghr-203ENSMUST00000110698 1171 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC11.65□□□□□ -0.54
Rfx3P48381 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC11.65□□□□□ -0.54
Rfx3P48381 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC11.65□□□□□ -0.54
Rfx3P48381 AC155286.1-201ENSMUST00000218632 448 ntBASIC11.65□□□□□ -0.54
Rfx3P48381 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Rhbdl2-201ENSMUST00000053202 1217 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.54
Rfx3P48381 Gm2423-201ENSMUST00000074863 733 ntBASIC11.65□□□□□ -0.54
Rfx3P48381 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 AC096628.2-201ENSMUST00000225443 1413 ntBASIC11.65□□□□□ -0.54
Rfx3P48381 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.54
Rfx3P48381 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms