Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC14.94□□□□□ -0.02
Traf1P39428 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC14.94□□□□□ -0.02
Traf1P39428 Gm7783-201ENSMUST00000204795 781 ntBASIC14.94□□□□□ -0.02
Traf1P39428 AC069562.3-201ENSMUST00000225387 587 ntBASIC14.94□□□□□ -0.02
Traf1P39428 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Traf1P39428 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC14.94□□□□□ -0.02
Traf1P39428 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 Kcnj3-201ENSMUST00000067101 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 Yeats2-201ENSMUST00000090052 5997 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Traf1P39428 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC14.94□□□□□ -0.02
Traf1P39428 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Efhc1-201ENSMUST00000038447 2146 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Kars-202ENSMUST00000093120 2131 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Traf1P39428 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Gm4986-201ENSMUST00000119731 549 ntBASIC14.93□□□□□ -0.02
Traf1P39428 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC14.93□□□□□ -0.02
Traf1P39428 Gm22121-201ENSMUST00000175148 54 ntBASIC14.93□□□□□ -0.02
Traf1P39428 Tex9-206ENSMUST00000183574 1264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC14.93□□□□□ -0.02
Traf1P39428 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC14.93□□□□□ -0.02
Traf1P39428 Gm8227-201ENSMUST00000223306 571 ntBASIC14.93□□□□□ -0.02
Traf1P39428 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC14.93□□□□□ -0.02
Traf1P39428 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Traf1P39428 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Traf1P39428 Slc4a1ap-209ENSMUST00000202214 2806 ntAPPRIS P3 TSL 5 BASIC14.93□□□□□ -0.02
Traf1P39428 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Traf1P39428 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Traf1P39428 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
Traf1P39428 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Traf1P39428 Ssr1-203ENSMUST00000225246 1825 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Traf1P39428 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
Traf1P39428 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Rbl2-208ENSMUST00000209518 4792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Ints1-201ENSMUST00000072607 7102 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Traf1P39428 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.92□□□□□ -0.02
Traf1P39428 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC14.92□□□□□ -0.02
Traf1P39428 Cbfa2t2-ps1-201ENSMUST00000117165 730 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Gm9061-201ENSMUST00000182707 1006 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Gm38158-201ENSMUST00000194617 339 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Gm44772-201ENSMUST00000207623 1191 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC14.92□□□□□ -0.02
Traf1P39428 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Pcgf5-203ENSMUST00000224679 1269 ntAPPRIS P5 BASIC14.92□□□□□ -0.02
Traf1P39428 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
Traf1P39428 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Mlkl-202ENSMUST00000120432 1976 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC14.92□□□□□ -0.02
Traf1P39428 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Naa50-201ENSMUST00000063520 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
Traf1P39428 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Traf1P39428 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Traf1P39428 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Traf1P39428 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Traf1P39428 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Traf1P39428 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Traf1P39428 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Traf1P39428 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Traf1P39428 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC14.91□□□□□ -0.02
Traf1P39428 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC14.91□□□□□ -0.02
Traf1P39428 Gm11658-201ENSMUST00000120913 1008 ntBASIC14.91□□□□□ -0.02
Traf1P39428 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Traf1P39428 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms