Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
Col1a1P11087 Gm18626-201ENSMUST00000221512 1409 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Spock1-206ENSMUST00000189373 3128 ntTSL 5 BASIC14.91□□□□□ -0.02
Col1a1P11087 Gm22133-201ENSMUST00000102082 109 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 Gm12029-201ENSMUST00000120073 832 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 Gm12196-201ENSMUST00000120954 262 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Rmrp-201ENSMUST00000157463 271 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC14.91□□□□□ -0.02
Col1a1P11087 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Mir6546-201ENSMUST00000184460 62 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 Gm7593-201ENSMUST00000187246 644 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 AC166992.1-201ENSMUST00000216356 565 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 AL732506.1-201ENSMUST00000226420 281 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC14.91□□□□□ -0.02
Col1a1P11087 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Strada-202ENSMUST00000103072 1517 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Ncf4-201ENSMUST00000096357 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 AC154262.2-201ENSMUST00000224310 2293 ntBASIC14.91□□□□□ -0.02
Col1a1P11087 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Col1a1P11087 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Col1a1P11087 Gm11405-201ENSMUST00000118689 1556 ntBASIC14.9□□□□□ -0.02
Col1a1P11087 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Pard3-202ENSMUST00000079777 3394 ntTSL 5 BASIC14.9□□□□□ -0.02
Col1a1P11087 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Gm11989-201ENSMUST00000117240 672 ntBASIC14.9□□□□□ -0.02
Col1a1P11087 Gm11362-201ENSMUST00000118838 850 ntBASIC14.9□□□□□ -0.02
Col1a1P11087 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Gm8365-201ENSMUST00000197334 648 ntBASIC14.9□□□□□ -0.02
Col1a1P11087 Gm4482-201ENSMUST00000200876 742 ntBASIC14.9□□□□□ -0.02
Col1a1P11087 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Col1a1P11087 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC14.9□□□□□ -0.02
Col1a1P11087 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC14.9□□□□□ -0.02
Col1a1P11087 Gm1821-202ENSMUST00000227415 750 ntBASIC14.9□□□□□ -0.02
Col1a1P11087 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Col1a1P11087 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col1a1P11087 Gm30238-201ENSMUST00000195528 2603 ntBASIC14.9□□□□□ -0.02
Col1a1P11087 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC14.9□□□□□ -0.02
Col1a1P11087 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col1a1P11087 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.89□□□□□ -0.03
Col1a1P11087 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Gm4993-201ENSMUST00000118719 1174 ntBASIC14.89□□□□□ -0.03
Col1a1P11087 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC14.89□□□□□ -0.03
Col1a1P11087 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC14.89□□□□□ -0.03
Col1a1P11087 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 4930470G03Rik-201ENSMUST00000122926 2447 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Col1a1P11087 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Acsf3-203ENSMUST00000212790 2171 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Col1a1P11087 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Nomo1-201ENSMUST00000033121 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.89□□□□□ -0.03
Col1a1P11087 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Rusc2-207ENSMUST00000131668 5093 ntTSL 5 BASIC14.89□□□□□ -0.03
Col1a1P11087 Adad1-203ENSMUST00000144629 3101 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC14.89□□□□□ -0.03
Col1a1P11087 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC14.89□□□□□ -0.03
Col1a1P11087 Gm45550-201ENSMUST00000209380 946 ntBASIC14.89□□□□□ -0.03
Col1a1P11087 AC133602.1-201ENSMUST00000227510 509 ntBASIC14.89□□□□□ -0.03
Col1a1P11087 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col1a1P11087 Mir219a-1-201ENSMUST00000083621 110 ntBASIC14.89□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms