Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Col5a1O88207 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col5a1O88207 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col5a1O88207 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col5a1O88207 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Col5a1O88207 Orc3-201ENSMUST00000048706 2300 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col5a1O88207 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Col5a1O88207 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC11.47□□□□□ -0.57
Col5a1O88207 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Col5a1O88207 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Col5a1O88207 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC11.47□□□□□ -0.57
Col5a1O88207 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm15515-201ENSMUST00000117827 822 ntBASIC11.46□□□□□ -0.57
Col5a1O88207 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm11450-201ENSMUST00000121144 333 ntBASIC11.46□□□□□ -0.57
Col5a1O88207 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Col5a1O88207 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm20392-201ENSMUST00000173047 701 ntBASIC11.46□□□□□ -0.57
Col5a1O88207 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm19187-201ENSMUST00000206781 892 ntBASIC11.46□□□□□ -0.57
Col5a1O88207 Zfp467-203ENSMUST00000114558 3115 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm2673-201ENSMUST00000120958 1608 ntBASIC11.46□□□□□ -0.57
Col5a1O88207 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Tom1-201ENSMUST00000078847 1769 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 Gsdmcl-ps-203ENSMUST00000188367 1375 ntBASIC11.46□□□□□ -0.57
Col5a1O88207 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Col5a1O88207 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC11.46□□□□□ -0.57
Col5a1O88207 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Col5a1O88207 Ntrk2-209ENSMUST00000225950 2640 ntBASIC11.46□□□□□ -0.57
Col5a1O88207 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Gm12165-201ENSMUST00000117047 342 ntBASIC11.46□□□□□ -0.58
Col5a1O88207 F12-202ENSMUST00000170921 478 ntTSL 3 BASIC11.46□□□□□ -0.58
Col5a1O88207 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC11.46□□□□□ -0.58
Col5a1O88207 Arhgef33-207ENSMUST00000224966 490 ntBASIC11.46□□□□□ -0.58
Col5a1O88207 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC11.46□□□□□ -0.58
Col5a1O88207 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC11.46□□□□□ -0.58
Col5a1O88207 AC122197.2-201ENSMUST00000219196 1635 ntBASIC11.46□□□□□ -0.58
Col5a1O88207 Gm36500-201ENSMUST00000221821 1626 ntTSL 5 BASIC11.46□□□□□ -0.58
Col5a1O88207 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.58
Col5a1O88207 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Col5a1O88207 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Col5a1O88207 Pkm-202ENSMUST00000163694 2041 ntAPPRIS ALT1 TSL 5 BASIC11.45□□□□□ -0.58
Col5a1O88207 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC11.45□□□□□ -0.58
Col5a1O88207 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC11.45□□□□□ -0.58
Col5a1O88207 Mef2d-204ENSMUST00000119251 3488 ntTSL 5 BASIC11.45□□□□□ -0.58
Col5a1O88207 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Col5a1O88207 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Gm15477-201ENSMUST00000140578 2130 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC11.45□□□□□ -0.58
Col5a1O88207 AC159308.2-201ENSMUST00000213592 2325 ntBASIC11.45□□□□□ -0.58
Col5a1O88207 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Col5a1O88207 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Col5a1O88207 Rbm18-202ENSMUST00000122456 781 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC11.45□□□□□ -0.58
Col5a1O88207 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.45□□□□□ -0.58
Col5a1O88207 Gm6781-201ENSMUST00000038304 1242 ntBASIC11.45□□□□□ -0.58
Col5a1O88207 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Col5a1O88207 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Col5a1O88207 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Col5a1O88207 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms