Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ccdc88aQ5SNZ0 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
Ccdc88aQ5SNZ0 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ccdc88aQ5SNZ0 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ccdc88aQ5SNZ0 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.73□□□□□ -0.05
Ccdc88aQ5SNZ0 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm7789-202ENSMUST00000211273 1400 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm37201-201ENSMUST00000191845 523 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm38092-201ENSMUST00000195600 653 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm5904-201ENSMUST00000210286 865 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Daam2-202ENSMUST00000224595 1926 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm5884-201ENSMUST00000036712 1479 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Cux1-212ENSMUST00000176778 5520 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm15547-201ENSMUST00000122152 333 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 AC167013.1-201ENSMUST00000228592 202 ntBASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ccdc88aQ5SNZ0 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Rab23-201ENSMUST00000088287 4322 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 AC151895.1-201ENSMUST00000219025 1742 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Palm2-202ENSMUST00000102905 3271 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm826-202ENSMUST00000109475 803 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm5597-201ENSMUST00000182353 1193 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm44545-201ENSMUST00000208262 746 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 AC141438.2-201ENSMUST00000215068 271 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 AC122876.1-201ENSMUST00000217619 825 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 AC135114.1-201ENSMUST00000228682 270 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Gm22058-201ENSMUST00000083393 310 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ccdc88aQ5SNZ0 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.71□□□□□ -0.06
Ccdc88aQ5SNZ0 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Ccdc88aQ5SNZ0 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ccdc88aQ5SNZ0 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Ccdc88aQ5SNZ0 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ccdc88aQ5SNZ0 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Ccdc88aQ5SNZ0 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Wiz-201ENSMUST00000064694 2871 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Ccdc88aQ5SNZ0 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms