Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Col8a1Q00780 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Gm11930-201ENSMUST00000117788 190 ntBASIC11.04□□□□□ -0.64
Col8a1Q00780 Gm13665-201ENSMUST00000120830 528 ntBASIC11.04□□□□□ -0.64
Col8a1Q00780 Gm17208-201ENSMUST00000168388 535 ntBASIC11.04□□□□□ -0.64
Col8a1Q00780 Gm27046-201ENSMUST00000182160 463 ntBASIC11.04□□□□□ -0.64
Col8a1Q00780 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC11.04□□□□□ -0.64
Col8a1Q00780 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Slc22a13b-ps-201ENSMUST00000173185 1458 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 P4hb-201ENSMUST00000026122 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Mrpl58-209ENSMUST00000153983 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Col8a1Q00780 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC11.04□□□□□ -0.64
Col8a1Q00780 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
Col8a1Q00780 Rasl12-202ENSMUST00000165682 1903 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm43056-201ENSMUST00000197865 2791 ntBASIC11.03□□□□□ -0.64
Col8a1Q00780 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Srrm1-203ENSMUST00000105861 3797 ntAPPRIS ALT2 TSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm43936-201ENSMUST00000203987 490 ntTSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 4930502A04Rik-201ENSMUST00000214059 865 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC11.03□□□□□ -0.64
Col8a1Q00780 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.03□□□□□ -0.64
Col8a1Q00780 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm42769-201ENSMUST00000198576 1659 ntBASIC11.03□□□□□ -0.64
Col8a1Q00780 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Atp1a2-201ENSMUST00000085913 6227 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Ubiad1-201ENSMUST00000051633 2992 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Gm26576-201ENSMUST00000181018 1977 ntTSL 5 BASIC11.03□□□□□ -0.64
Col8a1Q00780 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC11.03□□□□□ -0.64
Col8a1Q00780 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
Col8a1Q00780 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 Gm26513-201ENSMUST00000181802 2489 ntBASIC11.02□□□□□ -0.64
Col8a1Q00780 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 Zscan20-202ENSMUST00000097877 5364 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
Col8a1Q00780 Sh3bp4-201ENSMUST00000066279 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC11.02□□□□□ -0.64
Col8a1Q00780 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
Col8a1Q00780 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.02□□□□□ -0.65
Col8a1Q00780 Gm11597-201ENSMUST00000121423 964 ntBASIC11.02□□□□□ -0.65
Col8a1Q00780 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
Col8a1Q00780 Higd1c-201ENSMUST00000175683 507 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
Col8a1Q00780 Gm16740-201ENSMUST00000181819 956 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Gm9211-201ENSMUST00000182882 975 ntBASIC11.02□□□□□ -0.65
Col8a1Q00780 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Majin-201ENSMUST00000025699 1239 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Col8a1Q00780 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms