Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Acsl6-210ENSMUST00000108905 5807 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Ackr4-204ENSMUST00000219146 1654 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Dnm1-214ENSMUST00000201433 3146 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gnai1-201ENSMUST00000074694 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Ace3-201ENSMUST00000190995 2214 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm2155-201ENSMUST00000181581 1974 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm14371-201ENSMUST00000138925 1518 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Nphp4-201ENSMUST00000056567 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm45003-201ENSMUST00000205875 2158 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm12715-201ENSMUST00000121430 1128 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Mir5132-201ENSMUST00000175166 71 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm5363-201ENSMUST00000211927 938 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Cep85-201ENSMUST00000040271 3893 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm4782-201ENSMUST00000168705 2046 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Abat-203ENSMUST00000115839 2414 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Matn2-206ENSMUST00000228570 2798 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gramd1b-201ENSMUST00000045682 7488 ntAPPRIS P2 TSL 1 (best) BASIC11.16□□□□□ -0.62
Nkx3-1P97436 Gm10729-202ENSMUST00000193403 1375 ntBASIC11.16□□□□□ -0.62
Nkx3-1P97436 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Vwc2-202ENSMUST00000109681 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Cbs-202ENSMUST00000078509 2403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Tbc1d8-204ENSMUST00000193823 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Sphk2-203ENSMUST00000210060 2577 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Setdb1-203ENSMUST00000107171 4573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 P4ha1-202ENSMUST00000092512 2387 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Ldlrad2-201ENSMUST00000178923 429 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 CT030182.1-201ENSMUST00000225935 533 ntBASIC11.15□□□□□ -0.62
Nkx3-1P97436 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
Nkx3-1P97436 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.63
Nkx3-1P97436 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC11.15□□□□□ -0.63
Nkx3-1P97436 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Nkx3-1P97436 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.63
Nkx3-1P97436 Litaf-201ENSMUST00000023143 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Nkx3-1P97436 Muc1-201ENSMUST00000041142 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms