Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Gcnt2-205ENSMUST00000225759 1366 ntAPPRIS ALT2 BASIC12.32□□□□□ -0.44
Lire1P11260 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Slc39a8-205ENSMUST00000167390 3533 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 Klhl22-208ENSMUST00000165790 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 Mup-ps23-201ENSMUST00000118063 630 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC12.32□□□□□ -0.44
Lire1P11260 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.32□□□□□ -0.44
Lire1P11260 Gm38319-201ENSMUST00000194537 1266 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 Gm18307-201ENSMUST00000206864 949 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Gm45841-201ENSMUST00000207700 164 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Efcab10-201ENSMUST00000020878 673 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 AC155258.1-201ENSMUST00000219303 253 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Gm5356-201ENSMUST00000093326 615 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Tmem139-201ENSMUST00000095987 1147 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Lire1P11260 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 Cep131-201ENSMUST00000106227 3578 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Gm9347-201ENSMUST00000211473 1607 ntBASIC12.32□□□□□ -0.44
Lire1P11260 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Gm26565-201ENSMUST00000181642 1968 ntTSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Egr2-201ENSMUST00000048289 2965 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Lire1P11260 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Scn5a-202ENSMUST00000117911 8453 ntAPPRIS P3 TSL 1 (best) BASIC12.32□□□□□ -0.44
Lire1P11260 Cep131-202ENSMUST00000106229 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Cep131-207ENSMUST00000180242 3581 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Dnajc5g-201ENSMUST00000066544 1565 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Syngr2-202ENSMUST00000120928 1402 ntTSL 2 BASIC12.31□□□□□ -0.44
Lire1P11260 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Car4-201ENSMUST00000103194 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.31□□□□□ -0.44
Lire1P11260 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC12.31□□□□□ -0.44
Lire1P11260 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC12.31□□□□□ -0.44
Lire1P11260 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Men1-207ENSMUST00000113503 1851 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC12.31□□□□□ -0.44
Lire1P11260 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
Lire1P11260 Pde3a-201ENSMUST00000043259 12302 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Lire1P11260 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 AW822073-202ENSMUST00000204003 1959 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
Lire1P11260 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Gripap1-203ENSMUST00000115675 3015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Lire1P11260 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 Cd34-201ENSMUST00000016638 2454 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Lire1P11260 AC166359.1-201ENSMUST00000220243 1871 ntBASIC12.3□□□□□ -0.44
Lire1P11260 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms