Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Dmtn-209ENSMUST00000228295 2572 ntBASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
Brf1Q8CFK2 Gm42418-201ENSMUST00000182010 1831 ntBASIC25.65■■□□□ 1.7
Brf1Q8CFK2 AC158990.1-201ENSMUST00000221450 2016 ntBASIC25.65■■□□□ 1.7
Brf1Q8CFK2 Gm11847-201ENSMUST00000125165 1119 ntBASIC25.65■■□□□ 1.7
Brf1Q8CFK2 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC25.65■■□□□ 1.7
Brf1Q8CFK2 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC25.65■■□□□ 1.7
Brf1Q8CFK2 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
Brf1Q8CFK2 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC25.65■■□□□ 1.7
Brf1Q8CFK2 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC25.64■■□□□ 1.7
Brf1Q8CFK2 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Brf1Q8CFK2 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
Brf1Q8CFK2 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC25.64■■□□□ 1.7
Brf1Q8CFK2 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Brf1Q8CFK2 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.69
Brf1Q8CFK2 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC25.64■■□□□ 1.69
Brf1Q8CFK2 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
Brf1Q8CFK2 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
Brf1Q8CFK2 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC25.63■■□□□ 1.69
Brf1Q8CFK2 Gm8093-201ENSMUST00000128935 1892 ntBASIC25.63■■□□□ 1.69
Brf1Q8CFK2 Gm37415-201ENSMUST00000192265 2054 ntBASIC25.63■■□□□ 1.69
Brf1Q8CFK2 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
Brf1Q8CFK2 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC25.62■■□□□ 1.69
Brf1Q8CFK2 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
Brf1Q8CFK2 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Brf1Q8CFK2 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Brf1Q8CFK2 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Brf1Q8CFK2 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Brf1Q8CFK2 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC25.61■■□□□ 1.69
Brf1Q8CFK2 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Brf1Q8CFK2 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
Brf1Q8CFK2 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
Brf1Q8CFK2 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Brf1Q8CFK2 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Brf1Q8CFK2 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Brf1Q8CFK2 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Brf1Q8CFK2 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
Brf1Q8CFK2 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
Brf1Q8CFK2 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Brf1Q8CFK2 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Brf1Q8CFK2 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC25.58■■□□□ 1.69
Brf1Q8CFK2 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC25.58■■□□□ 1.69
Brf1Q8CFK2 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC25.58■■□□□ 1.69
Brf1Q8CFK2 Pth2-201ENSMUST00000042754 503 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Brf1Q8CFK2 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
Brf1Q8CFK2 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Brf1Q8CFK2 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Brf1Q8CFK2 Gm16464-201ENSMUST00000117815 1095 ntBASIC25.56■■□□□ 1.68
Brf1Q8CFK2 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Brf1Q8CFK2 Gm32051-202ENSMUST00000197905 2385 ntBASIC25.56■■□□□ 1.68
Brf1Q8CFK2 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Brf1Q8CFK2 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
Brf1Q8CFK2 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
Brf1Q8CFK2 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC25.53■■□□□ 1.68
Brf1Q8CFK2 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
Brf1Q8CFK2 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC25.53■■□□□ 1.68
Brf1Q8CFK2 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC25.52■■□□□ 1.68
Brf1Q8CFK2 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
Brf1Q8CFK2 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
Brf1Q8CFK2 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Brf1Q8CFK2 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
Brf1Q8CFK2 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC25.52■■□□□ 1.68
Brf1Q8CFK2 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Brf1Q8CFK2 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC25.51■■□□□ 1.67
Brf1Q8CFK2 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
Brf1Q8CFK2 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
Brf1Q8CFK2 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Brf1Q8CFK2 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC25.51■■□□□ 1.67
Brf1Q8CFK2 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC25.51■■□□□ 1.67
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms