Protein–RNA interactions for Protein: Q8CDY9

Pcdhb7, Protocadherin beta 7, mousemouse

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb7Q8CDY9 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdhb7Q8CDY9 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Pcdhb7Q8CDY9 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC21.16■□□□□ 0.98
Pcdhb7Q8CDY9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Pcdhb7Q8CDY9 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Gm5067-201ENSMUST00000170449 1009 ntBASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Pcdhb7Q8CDY9 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Pcdhb7Q8CDY9 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Pcdhb7Q8CDY9 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Pcdhb7Q8CDY9 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhb7Q8CDY9 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhb7Q8CDY9 Tmem240-202ENSMUST00000147721 817 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhb7Q8CDY9 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhb7Q8CDY9 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhb7Q8CDY9 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Pcdhb7Q8CDY9 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Pcdhb7Q8CDY9 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
Pcdhb7Q8CDY9 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdhb7Q8CDY9 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdhb7Q8CDY9 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC21.11■□□□□ 0.97
Pcdhb7Q8CDY9 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdhb7Q8CDY9 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdhb7Q8CDY9 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Pcdhb7Q8CDY9 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Pcdhb7Q8CDY9 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Pcdhb7Q8CDY9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdhb7Q8CDY9 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdhb7Q8CDY9 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdhb7Q8CDY9 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Pcdhb7Q8CDY9 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Pcdhb7Q8CDY9 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Pcdhb7Q8CDY9 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Pcdhb7Q8CDY9 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC21.07■□□□□ 0.96
Pcdhb7Q8CDY9 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Pcdhb7Q8CDY9 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Pcdhb7Q8CDY9 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Pcdhb7Q8CDY9 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC21.04■□□□□ 0.96
Pcdhb7Q8CDY9 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhb7Q8CDY9 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Pcdhb7Q8CDY9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhb7Q8CDY9 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhb7Q8CDY9 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Pcdhb7Q8CDY9 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms