Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Vps53Q8CCB4 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Vps53Q8CCB4 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Vps53Q8CCB4 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Vps53Q8CCB4 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Vps53Q8CCB4 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Vps53Q8CCB4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Vps53Q8CCB4 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Vps53Q8CCB4 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC24.48■■□□□ 1.51
Vps53Q8CCB4 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC24.48■■□□□ 1.51
Vps53Q8CCB4 Etf1-202ENSMUST00000180351 108 ntBASIC24.48■■□□□ 1.51
Vps53Q8CCB4 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Vps53Q8CCB4 AC115037.1-201ENSMUST00000223391 2173 ntBASIC24.48■■□□□ 1.51
Vps53Q8CCB4 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Vps53Q8CCB4 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
Vps53Q8CCB4 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC24.47■■□□□ 1.51
Vps53Q8CCB4 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC24.47■■□□□ 1.51
Vps53Q8CCB4 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC24.47■■□□□ 1.51
Vps53Q8CCB4 Gm26766-202ENSMUST00000227544 2347 ntBASIC24.47■■□□□ 1.51
Vps53Q8CCB4 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Vps53Q8CCB4 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC24.47■■□□□ 1.51
Vps53Q8CCB4 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Vps53Q8CCB4 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 AC153962.1-201ENSMUST00000218530 1948 ntBASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Vps53Q8CCB4 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Vps53Q8CCB4 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Vps53Q8CCB4 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC24.44■■□□□ 1.5
Vps53Q8CCB4 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
Vps53Q8CCB4 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Vps53Q8CCB4 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC24.44■■□□□ 1.5
Vps53Q8CCB4 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 C1qtnf5-204ENSMUST00000114821 1365 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC24.43■■□□□ 1.5
Vps53Q8CCB4 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
Vps53Q8CCB4 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Vps53Q8CCB4 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Vps53Q8CCB4 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Vps53Q8CCB4 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Vps53Q8CCB4 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC24.42■■□□□ 1.5
Vps53Q8CCB4 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Vps53Q8CCB4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Vps53Q8CCB4 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Vps53Q8CCB4 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Vps53Q8CCB4 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC24.39■■□□□ 1.5
Vps53Q8CCB4 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
Vps53Q8CCB4 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC24.39■■□□□ 1.49
Vps53Q8CCB4 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Vps53Q8CCB4 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC24.38■■□□□ 1.49
Vps53Q8CCB4 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC24.37■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms