Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ubfd1Q78JW9 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Ubfd1Q78JW9 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ubfd1Q78JW9 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ubfd1Q78JW9 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Ubfd1Q78JW9 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ubfd1Q78JW9 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC20.7■□□□□ 0.9
Ubfd1Q78JW9 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ubfd1Q78JW9 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ubfd1Q78JW9 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ubfd1Q78JW9 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.69■□□□□ 0.9
Ubfd1Q78JW9 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.69■□□□□ 0.9
Ubfd1Q78JW9 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ubfd1Q78JW9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ubfd1Q78JW9 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ubfd1Q78JW9 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Ubfd1Q78JW9 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ubfd1Q78JW9 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ubfd1Q78JW9 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ubfd1Q78JW9 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Ubfd1Q78JW9 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ubfd1Q78JW9 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ubfd1Q78JW9 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ubfd1Q78JW9 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ubfd1Q78JW9 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
Ubfd1Q78JW9 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Ubfd1Q78JW9 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Ubfd1Q78JW9 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC20.65■□□□□ 0.9
Ubfd1Q78JW9 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ubfd1Q78JW9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ubfd1Q78JW9 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.64■□□□□ 0.89
Ubfd1Q78JW9 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.64■□□□□ 0.89
Ubfd1Q78JW9 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ubfd1Q78JW9 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.64■□□□□ 0.89
Ubfd1Q78JW9 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ubfd1Q78JW9 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 AC158990.1-201ENSMUST00000221450 2016 ntBASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Ubfd1Q78JW9 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Ubfd1Q78JW9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Ubfd1Q78JW9 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.61■□□□□ 0.89
Ubfd1Q78JW9 AC115037.1-201ENSMUST00000223391 2173 ntBASIC20.61■□□□□ 0.89
Ubfd1Q78JW9 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Ubfd1Q78JW9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Ubfd1Q78JW9 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Ubfd1Q78JW9 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Ubfd1Q78JW9 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Ubfd1Q78JW9 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Ubfd1Q78JW9 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ubfd1Q78JW9 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ubfd1Q78JW9 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Ubfd1Q78JW9 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ubfd1Q78JW9 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.57■□□□□ 0.88
Ubfd1Q78JW9 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Ubfd1Q78JW9 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 83.5 ms