Protein–RNA interactions for Protein: Q6P9Z1

Smarcd3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcd3Q6P9Z1 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smarcd3Q6P9Z1 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Smarcd3Q6P9Z1 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smarcd3Q6P9Z1 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarcd3Q6P9Z1 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smarcd3Q6P9Z1 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC19.32■□□□□ 0.68
Smarcd3Q6P9Z1 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.32■□□□□ 0.68
Smarcd3Q6P9Z1 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Smarcd3Q6P9Z1 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smarcd3Q6P9Z1 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarcd3Q6P9Z1 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
Smarcd3Q6P9Z1 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarcd3Q6P9Z1 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarcd3Q6P9Z1 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarcd3Q6P9Z1 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smarcd3Q6P9Z1 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarcd3Q6P9Z1 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Smarcd3Q6P9Z1 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Smarcd3Q6P9Z1 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Smarcd3Q6P9Z1 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smarcd3Q6P9Z1 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smarcd3Q6P9Z1 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Smarcd3Q6P9Z1 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Smarcd3Q6P9Z1 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smarcd3Q6P9Z1 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Smarcd3Q6P9Z1 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
Smarcd3Q6P9Z1 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarcd3Q6P9Z1 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.25■□□□□ 0.67
Smarcd3Q6P9Z1 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarcd3Q6P9Z1 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarcd3Q6P9Z1 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Smarcd3Q6P9Z1 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Smarcd3Q6P9Z1 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
Smarcd3Q6P9Z1 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarcd3Q6P9Z1 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarcd3Q6P9Z1 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Smarcd3Q6P9Z1 Gm43006-201ENSMUST00000197702 1602 ntBASIC19.24■□□□□ 0.67
Smarcd3Q6P9Z1 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarcd3Q6P9Z1 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarcd3Q6P9Z1 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Smarcd3Q6P9Z1 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Smarcd3Q6P9Z1 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarcd3Q6P9Z1 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Smarcd3Q6P9Z1 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Smarcd3Q6P9Z1 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms