Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col11a1Q61245 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col11a1Q61245 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC24.49■■□□□ 1.51
Col11a1Q61245 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Col11a1Q61245 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC24.48■■□□□ 1.51
Col11a1Q61245 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
Col11a1Q61245 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Col11a1Q61245 Gm9207-201ENSMUST00000198773 1115 ntBASIC24.47■■□□□ 1.51
Col11a1Q61245 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC24.46■■□□□ 1.51
Col11a1Q61245 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Col11a1Q61245 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC24.46■■□□□ 1.51
Col11a1Q61245 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Col11a1Q61245 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Col11a1Q61245 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
Col11a1Q61245 Gm21168-201ENSMUST00000199646 1096 ntBASIC24.45■■□□□ 1.5
Col11a1Q61245 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Col11a1Q61245 Gm42699-201ENSMUST00000198104 1657 ntBASIC24.45■■□□□ 1.5
Col11a1Q61245 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Col11a1Q61245 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Col11a1Q61245 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Col11a1Q61245 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Col11a1Q61245 Gm12251-201ENSMUST00000117893 792 ntBASIC24.44■■□□□ 1.5
Col11a1Q61245 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Col11a1Q61245 Gm26571-201ENSMUST00000181399 666 ntBASIC24.44■■□□□ 1.5
Col11a1Q61245 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC24.44■■□□□ 1.5
Col11a1Q61245 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC24.44■■□□□ 1.5
Col11a1Q61245 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Col11a1Q61245 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC24.43■■□□□ 1.5
Col11a1Q61245 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Col11a1Q61245 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC24.42■■□□□ 1.5
Col11a1Q61245 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Col11a1Q61245 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Col11a1Q61245 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC24.42■■□□□ 1.5
Col11a1Q61245 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Col11a1Q61245 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Col11a1Q61245 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Col11a1Q61245 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
Col11a1Q61245 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Col11a1Q61245 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Col11a1Q61245 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
Col11a1Q61245 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Col11a1Q61245 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Col11a1Q61245 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Col11a1Q61245 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC24.4■■□□□ 1.5
Col11a1Q61245 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC24.4■■□□□ 1.5
Col11a1Q61245 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
Col11a1Q61245 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC24.39■■□□□ 1.49
Col11a1Q61245 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Col11a1Q61245 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Col11a1Q61245 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Col11a1Q61245 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Col11a1Q61245 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Col11a1Q61245 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Col11a1Q61245 Mir7075-201ENSMUST00000184187 82 ntBASIC24.38■■□□□ 1.49
Col11a1Q61245 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Col11a1Q61245 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Col11a1Q61245 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Col11a1Q61245 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
Col11a1Q61245 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC24.37■■□□□ 1.49
Col11a1Q61245 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Col11a1Q61245 Gm43173-201ENSMUST00000202246 593 ntBASIC24.37■■□□□ 1.49
Col11a1Q61245 AC116713.1-201ENSMUST00000215074 430 ntBASIC24.37■■□□□ 1.49
Col11a1Q61245 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
Col11a1Q61245 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Col11a1Q61245 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Col11a1Q61245 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Col11a1Q61245 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
Col11a1Q61245 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC24.36■■□□□ 1.49
Col11a1Q61245 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Col11a1Q61245 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Col11a1Q61245 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Col11a1Q61245 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
Col11a1Q61245 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC24.36■■□□□ 1.49
Col11a1Q61245 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Col11a1Q61245 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Col11a1Q61245 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC24.35■■□□□ 1.49
Col11a1Q61245 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Col11a1Q61245 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Col11a1Q61245 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Col11a1Q61245 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Col11a1Q61245 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC24.34■■□□□ 1.49
Col11a1Q61245 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.34■■□□□ 1.49
Col11a1Q61245 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC24.33■■□□□ 1.49
Col11a1Q61245 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC24.33■■□□□ 1.49
Col11a1Q61245 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC24.33■■□□□ 1.48
Col11a1Q61245 Lrrc3b-201ENSMUST00000055211 1655 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Col11a1Q61245 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC24.32■■□□□ 1.48
Col11a1Q61245 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Col11a1Q61245 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Col11a1Q61245 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Col11a1Q61245 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC24.32■■□□□ 1.48
Col11a1Q61245 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC24.32■■□□□ 1.48
Col11a1Q61245 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Col11a1Q61245 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Col11a1Q61245 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC24.31■■□□□ 1.48
Col11a1Q61245 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC24.31■■□□□ 1.48
Col11a1Q61245 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col11a1Q61245 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC24.31■■□□□ 1.48
Col11a1Q61245 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC24.31■■□□□ 1.48
Col11a1Q61245 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms