Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col9a1Q05722 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col9a1Q05722 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC21.3■■□□□ 1
Col9a1Q05722 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Col9a1Q05722 Amer2-203ENSMUST00000225247 2662 ntBASIC21.3■■□□□ 1
Col9a1Q05722 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Col9a1Q05722 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC21.29■■□□□ 1
Col9a1Q05722 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Col9a1Q05722 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col9a1Q05722 AV356131-201ENSMUST00000206201 750 ntBASIC21.29■■□□□ 1
Col9a1Q05722 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
Col9a1Q05722 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col9a1Q05722 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col9a1Q05722 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC21.28■■□□□ 1
Col9a1Q05722 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col9a1Q05722 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col9a1Q05722 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Col9a1Q05722 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Col9a1Q05722 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.27■■□□□ 1
Col9a1Q05722 Gm43060-201ENSMUST00000200621 289 ntBASIC21.27■■□□□ 1
Col9a1Q05722 Gm43173-201ENSMUST00000202246 593 ntBASIC21.27■■□□□ 1
Col9a1Q05722 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.27■■□□□ 1
Col9a1Q05722 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
Col9a1Q05722 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col9a1Q05722 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col9a1Q05722 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.26■□□□□ 0.99
Col9a1Q05722 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col9a1Q05722 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col9a1Q05722 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col9a1Q05722 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC21.26■□□□□ 0.99
Col9a1Q05722 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col9a1Q05722 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col9a1Q05722 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.25■□□□□ 0.99
Col9a1Q05722 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
Col9a1Q05722 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.25■□□□□ 0.99
Col9a1Q05722 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Col9a1Q05722 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col9a1Q05722 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Col9a1Q05722 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Col9a1Q05722 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.24■□□□□ 0.99
Col9a1Q05722 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col9a1Q05722 Gm12933-201ENSMUST00000120203 872 ntBASIC21.23■□□□□ 0.99
Col9a1Q05722 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Col9a1Q05722 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Col9a1Q05722 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Col9a1Q05722 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Col9a1Q05722 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC21.22■□□□□ 0.99
Col9a1Q05722 Gm11847-201ENSMUST00000125165 1119 ntBASIC21.22■□□□□ 0.99
Col9a1Q05722 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Col9a1Q05722 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC21.22■□□□□ 0.99
Col9a1Q05722 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
Col9a1Q05722 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.22■□□□□ 0.99
Col9a1Q05722 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Col9a1Q05722 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Col9a1Q05722 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC21.22■□□□□ 0.99
Col9a1Q05722 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col9a1Q05722 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.22■□□□□ 0.99
Col9a1Q05722 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col9a1Q05722 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col9a1Q05722 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Col9a1Q05722 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC21.21■□□□□ 0.99
Col9a1Q05722 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.21■□□□□ 0.99
Col9a1Q05722 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Col9a1Q05722 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col9a1Q05722 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col9a1Q05722 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col9a1Q05722 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC21.2■□□□□ 0.98
Col9a1Q05722 Gm7143-201ENSMUST00000222811 859 ntBASIC21.2■□□□□ 0.98
Col9a1Q05722 Gm13836-201ENSMUST00000121159 501 ntBASIC21.19■□□□□ 0.98
Col9a1Q05722 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col9a1Q05722 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.19■□□□□ 0.98
Col9a1Q05722 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Col9a1Q05722 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col9a1Q05722 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col9a1Q05722 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col9a1Q05722 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col9a1Q05722 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col9a1Q05722 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col9a1Q05722 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col9a1Q05722 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC21.18■□□□□ 0.98
Col9a1Q05722 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Col9a1Q05722 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC21.18■□□□□ 0.98
Col9a1Q05722 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col9a1Q05722 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col9a1Q05722 Mir6982-201ENSMUST00000184354 68 ntBASIC21.17■□□□□ 0.98
Col9a1Q05722 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col9a1Q05722 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Col9a1Q05722 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col9a1Q05722 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col9a1Q05722 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col9a1Q05722 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col9a1Q05722 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col9a1Q05722 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Col9a1Q05722 Gm20760-201ENSMUST00000179197 648 ntBASIC21.16■□□□□ 0.98
Col9a1Q05722 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col9a1Q05722 Gm10033-202ENSMUST00000211874 928 ntBASIC21.16■□□□□ 0.98
Col9a1Q05722 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.16■□□□□ 0.98
Col9a1Q05722 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col9a1Q05722 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col9a1Q05722 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 14 ms