Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk1P22518 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk1P22518 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk1P22518 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk1P22518 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC19.52■□□□□ 0.72
Clk1P22518 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Clk1P22518 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Clk1P22518 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Clk1P22518 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Clk1P22518 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Clk1P22518 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Clk1P22518 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Clk1P22518 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clk1P22518 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clk1P22518 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC19.5■□□□□ 0.71
Clk1P22518 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clk1P22518 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Clk1P22518 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Clk1P22518 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Clk1P22518 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
Clk1P22518 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
Clk1P22518 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clk1P22518 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clk1P22518 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Clk1P22518 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk1P22518 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk1P22518 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk1P22518 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.48■□□□□ 0.71
Clk1P22518 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk1P22518 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Clk1P22518 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Clk1P22518 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk1P22518 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Clk1P22518 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Clk1P22518 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Clk1P22518 Nsd1-206ENSMUST00000224918 1001 ntBASIC19.47■□□□□ 0.71
Clk1P22518 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk1P22518 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk1P22518 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk1P22518 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Clk1P22518 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Anp32b-201ENSMUST00000102926 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Clk1P22518 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC19.46■□□□□ 0.71
Clk1P22518 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Clk1P22518 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk1P22518 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk1P22518 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk1P22518 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Clk1P22518 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.45■□□□□ 0.7
Clk1P22518 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk1P22518 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk1P22518 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk1P22518 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Clk1P22518 Podxl2-210ENSMUST00000145944 2065 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Clk1P22518 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Clk1P22518 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC19.44■□□□□ 0.7
Clk1P22518 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk1P22518 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk1P22518 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Clk1P22518 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Clk1P22518 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk1P22518 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk1P22518 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk1P22518 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC19.44■□□□□ 0.7
Clk1P22518 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Clk1P22518 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.43■□□□□ 0.7
Clk1P22518 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Clk1P22518 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.43■□□□□ 0.7
Clk1P22518 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Clk1P22518 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.43■□□□□ 0.7
Clk1P22518 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.43■□□□□ 0.7
Clk1P22518 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Clk1P22518 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Gm5921-201ENSMUST00000075898 882 ntBASIC19.42■□□□□ 0.7
Clk1P22518 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Clk1P22518 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clk1P22518 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clk1P22518 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clk1P22518 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clk1P22518 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk1P22518 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Clk1P22518 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk1P22518 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms