Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm26766-202ENSMUST00000227544 2347 ntBASIC19.71■□□□□ 0.75
Lire1P11260 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lire1P11260 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Lire1P11260 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.71■□□□□ 0.75
Lire1P11260 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lire1P11260 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Lire1P11260 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lire1P11260 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Lire1P11260 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.7■□□□□ 0.74
Lire1P11260 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lire1P11260 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC19.7■□□□□ 0.74
Lire1P11260 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC19.7■□□□□ 0.74
Lire1P11260 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lire1P11260 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC19.7■□□□□ 0.74
Lire1P11260 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lire1P11260 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Lire1P11260 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
Lire1P11260 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC19.69■□□□□ 0.74
Lire1P11260 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lire1P11260 Gm42699-201ENSMUST00000198104 1657 ntBASIC19.69■□□□□ 0.74
Lire1P11260 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lire1P11260 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Lire1P11260 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC19.69■□□□□ 0.74
Lire1P11260 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC19.69■□□□□ 0.74
Lire1P11260 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Lire1P11260 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lire1P11260 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lire1P11260 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Lire1P11260 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lire1P11260 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lire1P11260 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Lire1P11260 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Lire1P11260 Nsd1-203ENSMUST00000224156 1149 ntBASIC19.68■□□□□ 0.74
Lire1P11260 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Lire1P11260 Gm45444-201ENSMUST00000211394 898 ntBASIC19.67■□□□□ 0.74
Lire1P11260 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.67■□□□□ 0.74
Lire1P11260 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Lire1P11260 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Lire1P11260 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC19.66■□□□□ 0.74
Lire1P11260 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lire1P11260 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Lire1P11260 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lire1P11260 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lire1P11260 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lire1P11260 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lire1P11260 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Lire1P11260 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.65■□□□□ 0.74
Lire1P11260 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC19.65■□□□□ 0.74
Lire1P11260 Rps24-207ENSMUST00000224568 714 ntBASIC19.65■□□□□ 0.74
Lire1P11260 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lire1P11260 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
Lire1P11260 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Lire1P11260 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Lire1P11260 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lire1P11260 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Lire1P11260 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Lire1P11260 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC19.65■□□□□ 0.74
Lire1P11260 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Lire1P11260 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lire1P11260 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lire1P11260 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lire1P11260 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
Lire1P11260 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Lire1P11260 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC19.64■□□□□ 0.73
Lire1P11260 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Lire1P11260 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.63■□□□□ 0.73
Lire1P11260 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Lire1P11260 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lire1P11260 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Lire1P11260 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lire1P11260 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lire1P11260 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC19.62■□□□□ 0.73
Lire1P11260 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.62■□□□□ 0.73
Lire1P11260 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Lire1P11260 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Lire1P11260 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Lire1P11260 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
Lire1P11260 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lire1P11260 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lire1P11260 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC19.61■□□□□ 0.73
Lire1P11260 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lire1P11260 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lire1P11260 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Lire1P11260 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Lire1P11260 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms