Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cbx4O55187 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.72■□□□□ 0.91
Cbx4O55187 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cbx4O55187 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cbx4O55187 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cbx4O55187 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Cbx4O55187 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Cbx4O55187 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.71■□□□□ 0.91
Cbx4O55187 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cbx4O55187 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cbx4O55187 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC20.7■□□□□ 0.9
Cbx4O55187 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cbx4O55187 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.7■□□□□ 0.9
Cbx4O55187 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cbx4O55187 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cbx4O55187 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cbx4O55187 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Cbx4O55187 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Cbx4O55187 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cbx4O55187 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cbx4O55187 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC20.69■□□□□ 0.9
Cbx4O55187 Gm32051-202ENSMUST00000197905 2385 ntBASIC20.69■□□□□ 0.9
Cbx4O55187 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Cbx4O55187 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cbx4O55187 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cbx4O55187 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cbx4O55187 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cbx4O55187 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cbx4O55187 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cbx4O55187 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cbx4O55187 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cbx4O55187 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cbx4O55187 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cbx4O55187 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cbx4O55187 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cbx4O55187 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cbx4O55187 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.66■□□□□ 0.9
Cbx4O55187 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cbx4O55187 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cbx4O55187 Gm13042-201ENSMUST00000119244 1955 ntBASIC20.66■□□□□ 0.9
Cbx4O55187 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cbx4O55187 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cbx4O55187 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cbx4O55187 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC20.65■□□□□ 0.9
Cbx4O55187 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cbx4O55187 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cbx4O55187 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Cbx4O55187 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC20.65■□□□□ 0.9
Cbx4O55187 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cbx4O55187 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.65■□□□□ 0.9
Cbx4O55187 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Cbx4O55187 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.9
Cbx4O55187 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
Cbx4O55187 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cbx4O55187 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Cbx4O55187 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cbx4O55187 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cbx4O55187 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Cbx4O55187 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cbx4O55187 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cbx4O55187 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cbx4O55187 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Cbx4O55187 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cbx4O55187 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cbx4O55187 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC20.63■□□□□ 0.89
Cbx4O55187 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC20.63■□□□□ 0.89
Cbx4O55187 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.63■□□□□ 0.89
Cbx4O55187 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cbx4O55187 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cbx4O55187 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cbx4O55187 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cbx4O55187 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cbx4O55187 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.62■□□□□ 0.89
Cbx4O55187 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cbx4O55187 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cbx4O55187 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.62■□□□□ 0.89
Cbx4O55187 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cbx4O55187 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cbx4O55187 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.61■□□□□ 0.89
Cbx4O55187 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC20.61■□□□□ 0.89
Cbx4O55187 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Cbx4O55187 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cbx4O55187 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cbx4O55187 Gm28536-201ENSMUST00000190971 1317 ntBASIC20.6■□□□□ 0.89
Cbx4O55187 Gm45444-201ENSMUST00000211394 898 ntBASIC20.6■□□□□ 0.89
Cbx4O55187 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms