Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Hsd3b7-201ENSMUST00000046863 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Vps28Q9D1C8 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Mir686-201ENSMUST00000102174 109 ntBASIC13.28□□□□□ -0.28
Vps28Q9D1C8 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Cdk4-202ENSMUST00000120226 714 ntTSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Mtmr2-209ENSMUST00000156801 617 ntTSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Gm7029-201ENSMUST00000173226 450 ntBASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Gm26927-201ENSMUST00000182385 965 ntBASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Gm19931-201ENSMUST00000198920 368 ntBASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Olfr983-201ENSMUST00000050996 1050 ntTSL 2 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Ifitm10-202ENSMUST00000084412 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Adam22-207ENSMUST00000115388 9161 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Rai1-202ENSMUST00000090806 7217 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Klhl8-203ENSMUST00000112815 2898 ntTSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Agrn-201ENSMUST00000071248 4831 ntTSL 5 BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Vps28Q9D1C8 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Ncor2-204ENSMUST00000111394 7452 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Dcaf4-208ENSMUST00000223291 2005 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Gcfc2-201ENSMUST00000043195 4192 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.27□□□□□ -0.28
Vps28Q9D1C8 AC125108.1-201ENSMUST00000218986 2330 ntBASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Vps28Q9D1C8 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Gm11637-201ENSMUST00000120601 592 ntBASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 AC101945.2-201ENSMUST00000227886 1377 ntBASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Vax2os-201ENSMUST00000123402 1435 ntTSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Dph3-202ENSMUST00000067955 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC13.27□□□□□ -0.29
Vps28Q9D1C8 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Epha5-204ENSMUST00000113401 5158 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Gm5989-201ENSMUST00000096092 2077 ntBASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC13.27□□□□□ -0.29
Vps28Q9D1C8 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Vps28Q9D1C8 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Vps28Q9D1C8 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Vps28Q9D1C8 Atp6ap1-202ENSMUST00000114171 2157 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Vps28Q9D1C8 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC13.26□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms