Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm4760-201ENSMUST00000119663 1030 ntBASIC17.69■□□□□ 0.42
Usp40Q8BWR4 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm16505-201ENSMUST00000179981 232 ntBASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm37201-201ENSMUST00000191845 523 ntBASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm9678-201ENSMUST00000198979 1149 ntBASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 AC123857.2-201ENSMUST00000225756 1582 ntBASIC17.69■□□□□ 0.42
Usp40Q8BWR4 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gtf2i-206ENSMUST00000172715 4114 ntTSL 5 BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm2673-201ENSMUST00000120958 1608 ntBASIC17.69■□□□□ 0.42
Usp40Q8BWR4 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Gm14109-201ENSMUST00000118814 309 ntBASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Gm13387-202ENSMUST00000131147 2646 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Gm27046-201ENSMUST00000182160 463 ntBASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Gm3096-201ENSMUST00000185770 364 ntBASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Gm5363-201ENSMUST00000211927 938 ntBASIC17.68■□□□□ 0.42
Usp40Q8BWR4 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Mettl6-204ENSMUST00000227595 1027 ntBASIC17.68■□□□□ 0.42
Usp40Q8BWR4 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 D630023F18Rik-201ENSMUST00000050047 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 4930453N24Rik-201ENSMUST00000076991 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Ptprk-201ENSMUST00000166468 6177 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Plekha2-204ENSMUST00000128715 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Gm4864-201ENSMUST00000219894 1461 ntBASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Cdk18-201ENSMUST00000027697 4355 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Usp40Q8BWR4 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Gm44891-201ENSMUST00000208817 2223 ntBASIC17.67■□□□□ 0.42
Usp40Q8BWR4 CT025610.1-201ENSMUST00000224552 1786 ntBASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Gm14017-201ENSMUST00000121934 386 ntBASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Gm24990-201ENSMUST00000157406 323 ntBASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Rhox2a-201ENSMUST00000063340 795 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Usp40Q8BWR4 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 45.7 ms