Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Col11a1Q61245 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC14.18□□□□□ -0.14
Col11a1Q61245 Ano8-201ENSMUST00000093450 3653 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Col11a1Q61245 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Gm14724-201ENSMUST00000118400 537 ntBASIC14.18□□□□□ -0.14
Col11a1Q61245 Gm11451-201ENSMUST00000118946 630 ntBASIC14.18□□□□□ -0.14
Col11a1Q61245 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC14.18□□□□□ -0.14
Col11a1Q61245 Gm23218-201ENSMUST00000158124 276 ntBASIC14.18□□□□□ -0.14
Col11a1Q61245 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Col11a1Q61245 Gm23045-201ENSMUST00000175041 96 ntBASIC14.18□□□□□ -0.14
Col11a1Q61245 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC14.18□□□□□ -0.14
Col11a1Q61245 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC14.18□□□□□ -0.14
Col11a1Q61245 Agpat4-201ENSMUST00000024594 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Lrrfip1-202ENSMUST00000068167 2849 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Gm23771-201ENSMUST00000178702 110 ntBASIC14.17□□□□□ -0.14
Col11a1Q61245 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Gm8343-201ENSMUST00000182705 994 ntBASIC14.17□□□□□ -0.14
Col11a1Q61245 Gm28686-201ENSMUST00000187404 609 ntBASIC14.17□□□□□ -0.14
Col11a1Q61245 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Gm43184-201ENSMUST00000197247 542 ntBASIC14.17□□□□□ -0.14
Col11a1Q61245 Gm9132-201ENSMUST00000210182 832 ntBASIC14.17□□□□□ -0.14
Col11a1Q61245 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col11a1Q61245 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Poli-205ENSMUST00000161542 2736 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Col11a1Q61245 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Col11a1Q61245 Cdc20b-201ENSMUST00000109244 1620 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Ngef-201ENSMUST00000027477 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Gm5847-201ENSMUST00000178959 1595 ntBASIC14.16□□□□□ -0.14
Col11a1Q61245 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Yipf6-202ENSMUST00000113811 930 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Gm11706-201ENSMUST00000151282 316 ntTSL 5 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Gm20392-201ENSMUST00000173047 701 ntBASIC14.16□□□□□ -0.14
Col11a1Q61245 Mir8115-201ENSMUST00000184992 119 ntBASIC14.16□□□□□ -0.14
Col11a1Q61245 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC14.16□□□□□ -0.14
Col11a1Q61245 Olfr76-201ENSMUST00000087822 1048 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC14.16□□□□□ -0.14
Col11a1Q61245 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Col11a1Q61245 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Slc25a18-201ENSMUST00000112682 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm12579-201ENSMUST00000118040 783 ntBASIC14.15□□□□□ -0.14
Col11a1Q61245 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col11a1Q61245 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC14.15□□□□□ -0.14
Col11a1Q61245 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm2965-201ENSMUST00000198365 343 ntBASIC14.15□□□□□ -0.14
Col11a1Q61245 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC14.15□□□□□ -0.14
Col11a1Q61245 Gm18636-201ENSMUST00000218846 1066 ntBASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms