Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Pbx3-202ENSMUST00000113132 2734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Cmip-201ENSMUST00000095172 2276 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Nkx3-1P97436 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Mboat2-201ENSMUST00000078902 2467 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Fgfr1-202ENSMUST00000117179 4046 ntAPPRIS ALT1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Gm12997-201ENSMUST00000120207 640 ntBASIC11.18□□□□□ -0.62
Nkx3-1P97436 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.18□□□□□ -0.62
Nkx3-1P97436 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 G630018N14Rik-201ENSMUST00000135656 1231 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Gm27230-202ENSMUST00000184671 857 ntTSL 3 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Gm8176-201ENSMUST00000191297 1099 ntBASIC11.18□□□□□ -0.62
Nkx3-1P97436 Gm30285-201ENSMUST00000214614 422 ntBASIC11.18□□□□□ -0.62
Nkx3-1P97436 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 AC139054.1-201ENSMUST00000226898 1598 ntBASIC11.18□□□□□ -0.62
Nkx3-1P97436 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Igsf9b-202ENSMUST00000133213 4239 ntAPPRIS P2 TSL 5 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Brinp1-201ENSMUST00000030036 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Ggt7-201ENSMUST00000029131 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Nkx3-1P97436 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Sv2b-202ENSMUST00000165175 5524 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Heatr3-201ENSMUST00000034079 3251 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Miga2-208ENSMUST00000140075 2196 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Pja1-202ENSMUST00000113790 2108 ntAPPRIS ALT2 TSL 2 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Tmem19-206ENSMUST00000218731 1346 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Snord83b-201ENSMUST00000104546 94 ntBASIC11.17□□□□□ -0.62
Nkx3-1P97436 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC11.17□□□□□ -0.62
Nkx3-1P97436 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm22121-201ENSMUST00000175148 54 ntBASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm29585-203ENSMUST00000188089 835 ntTSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm31256-201ENSMUST00000194705 506 ntBASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm37312-201ENSMUST00000195753 685 ntTSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.17□□□□□ -0.62
Nkx3-1P97436 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gm5904-201ENSMUST00000210286 865 ntBASIC11.17□□□□□ -0.62
Nkx3-1P97436 Olfr156-202ENSMUST00000079465 1099 ntAPPRIS P1 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Eif1ad-201ENSMUST00000025759 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Myef2-207ENSMUST00000147105 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Egr2-203ENSMUST00000127820 2665 ntAPPRIS ALT2 TSL 5 BASIC11.17□□□□□ -0.62
Nkx3-1P97436 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms