Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Rfx3P48381 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Rfx3P48381 AI597479-201ENSMUST00000010434 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Rfx3P48381 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Rfx3P48381 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Rfx3P48381 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC11.72□□□□□ -0.53
Rfx3P48381 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Rfx3P48381 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Rfx3P48381 Fnip2-203ENSMUST00000133154 7299 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Rfx3P48381 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Chodl-203ENSMUST00000114216 1550 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Tmem269-202ENSMUST00000212054 1504 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Rfx3P48381 Fbxo48-201ENSMUST00000061327 2117 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Rfx3P48381 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Gm15371-201ENSMUST00000117057 784 ntBASIC11.71□□□□□ -0.53
Rfx3P48381 Rpl18a-ps1-201ENSMUST00000161190 523 ntBASIC11.71□□□□□ -0.53
Rfx3P48381 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC11.71□□□□□ -0.53
Rfx3P48381 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC11.71□□□□□ -0.53
Rfx3P48381 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC11.71□□□□□ -0.53
Rfx3P48381 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Rfx3P48381 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Rfx3P48381 Prss8-202ENSMUST00000206124 1709 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Rfx3P48381 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Rfx3P48381 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Rfx3P48381 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Rfx3P48381 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Rfx3P48381 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Rfx3P48381 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Rfx3P48381 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Rfx3P48381 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Gab3-201ENSMUST00000037374 2153 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC11.7□□□□□ -0.54
Rfx3P48381 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Rfx3P48381 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC11.7□□□□□ -0.54
Rfx3P48381 Gm26894-201ENSMUST00000180828 1134 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Gm29608-201ENSMUST00000190444 463 ntBASIC11.7□□□□□ -0.54
Rfx3P48381 Gm18307-201ENSMUST00000206864 949 ntBASIC11.7□□□□□ -0.54
Rfx3P48381 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC11.7□□□□□ -0.54
Rfx3P48381 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 AC156560.2-201ENSMUST00000221232 264 ntBASIC11.7□□□□□ -0.54
Rfx3P48381 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Cebpd-201ENSMUST00000096232 3746 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Rfx3P48381 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Wdr25-202ENSMUST00000167816 2657 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
Rfx3P48381 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC11.7□□□□□ -0.54
Rfx3P48381 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Rfx3P48381 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms