Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx2P43241 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx2P43241 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Cdx2P43241 Gdap1l1-202ENSMUST00000109420 2475 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Pianp-207ENSMUST00000162170 2053 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC12.27□□□□□ -0.45
Cdx2P43241 Gm5523-201ENSMUST00000180415 997 ntBASIC12.27□□□□□ -0.45
Cdx2P43241 AC154222.2-201ENSMUST00000225848 607 ntBASIC12.27□□□□□ -0.45
Cdx2P43241 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Atp6v1g1-201ENSMUST00000035301 1135 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Cdx2P43241 Gm10312-201ENSMUST00000078515 489 ntBASIC12.27□□□□□ -0.45
Cdx2P43241 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Cplx4-201ENSMUST00000025397 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Cnnm2-202ENSMUST00000099373 3558 ntAPPRIS P4 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Cdx2P43241 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.27□□□□□ -0.45
Cdx2P43241 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Ldlrad3-201ENSMUST00000058790 3833 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Il17rd-203ENSMUST00000225146 3366 ntBASIC12.27□□□□□ -0.45
Cdx2P43241 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.45
Cdx2P43241 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC12.27□□□□□ -0.45
Cdx2P43241 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC12.27□□□□□ -0.45
Cdx2P43241 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Cdx2P43241 Irak3-201ENSMUST00000020448 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC12.26□□□□□ -0.45
Cdx2P43241 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC12.26□□□□□ -0.45
Cdx2P43241 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC12.26□□□□□ -0.45
Cdx2P43241 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Mllt10-203ENSMUST00000114671 5063 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Cdx2P43241 Gm12291-201ENSMUST00000121627 311 ntBASIC12.26□□□□□ -0.45
Cdx2P43241 Pdlim2-204ENSMUST00000127836 920 ntTSL 5 BASIC12.26□□□□□ -0.45
Cdx2P43241 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC12.26□□□□□ -0.45
Cdx2P43241 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC12.26□□□□□ -0.45
Cdx2P43241 Gm8913-201ENSMUST00000209491 641 ntBASIC12.26□□□□□ -0.45
Cdx2P43241 Gzmn-202ENSMUST00000225535 989 ntBASIC12.26□□□□□ -0.45
Cdx2P43241 CT025694.1-201ENSMUST00000226188 934 ntBASIC12.26□□□□□ -0.45
Cdx2P43241 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Cdx2P43241 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 AC079680.2-201ENSMUST00000219181 1306 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Kcnd3-201ENSMUST00000079169 2102 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Zfp672-204ENSMUST00000108829 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Cdx2P43241 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Cdx2P43241 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Cdx2P43241 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Cdx2P43241 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Cdx2P43241 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Trim80-201ENSMUST00000093914 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Ccdc8-201ENSMUST00000094805 4809 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Cdx2P43241 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Cdx2P43241 Mir874-201ENSMUST00000104769 76 ntBASIC12.25□□□□□ -0.45
Cdx2P43241 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Cdx2P43241 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
Cdx2P43241 Gm13296-201ENSMUST00000117854 997 ntBASIC12.25□□□□□ -0.45
Cdx2P43241 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12.25□□□□□ -0.45
Cdx2P43241 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms