Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Gm5320-201ENSMUST00000207163 1519 ntBASIC10.49□□□□□ -0.73
Cdx1P18111 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC10.49□□□□□ -0.73
Cdx1P18111 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC10.49□□□□□ -0.73
Cdx1P18111 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC10.49□□□□□ -0.73
Cdx1P18111 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC10.49□□□□□ -0.73
Cdx1P18111 Gm24694-201ENSMUST00000180054 110 ntBASIC10.49□□□□□ -0.73
Cdx1P18111 Gm27663-201ENSMUST00000184839 110 ntBASIC10.49□□□□□ -0.73
Cdx1P18111 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 AC124732.1-201ENSMUST00000221551 910 ntBASIC10.49□□□□□ -0.73
Cdx1P18111 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Mrpl27-201ENSMUST00000025278 756 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Aldh3a1-202ENSMUST00000108716 1721 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Gpatch4-203ENSMUST00000193398 2210 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Asb10-202ENSMUST00000117900 1432 ntTSL 5 BASIC10.49□□□□□ -0.73
Cdx1P18111 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC10.49□□□□□ -0.73
Cdx1P18111 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC10.49□□□□□ -0.73
Cdx1P18111 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Ticam2-201ENSMUST00000070084 2340 ntAPPRIS P1 TSL 1 (best) BASIC10.49□□□□□ -0.73
Cdx1P18111 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Acin1-202ENSMUST00000022794 2365 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm37542-201ENSMUST00000192563 2832 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 AC124433.1-202ENSMUST00000224762 1535 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm26688-201ENSMUST00000181176 1568 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm4204-201ENSMUST00000110798 1231 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 Fis1-203ENSMUST00000111097 601 ntTSL 2 BASIC10.48□□□□□ -0.73
Cdx1P18111 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm8749-201ENSMUST00000117737 331 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC10.48□□□□□ -0.73
Cdx1P18111 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC10.48□□□□□ -0.73
Cdx1P18111 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Fis1-201ENSMUST00000019198 786 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm45098-201ENSMUST00000207179 657 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 Prrg2-207ENSMUST00000210500 922 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Shd-206ENSMUST00000225145 998 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 AC238811.1-201ENSMUST00000225302 441 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 2310002L09Rik-201ENSMUST00000030101 958 ntAPPRIS P3 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Nradd-201ENSMUST00000035069 1223 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
Cdx1P18111 Add1-202ENSMUST00000052836 2337 ntAPPRIS ALT2 TSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Grm5-202ENSMUST00000125009 8047 ntAPPRIS P3 TSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC10.48□□□□□ -0.73
Cdx1P18111 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 1810058I24Rik-203ENSMUST00000152147 2521 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
Cdx1P18111 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 AC126549.2-201ENSMUST00000223997 1976 ntBASIC10.48□□□□□ -0.73
Cdx1P18111 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Actn1-201ENSMUST00000021554 3734 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
Cdx1P18111 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm26584-201ENSMUST00000180551 3216 ntTSL 5 BASIC10.48□□□□□ -0.73
Cdx1P18111 Gm27177-202ENSMUST00000183514 2703 ntBASIC10.48□□□□□ -0.73
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms