Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Tmem199-201ENSMUST00000052566 1347 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm15770-201ENSMUST00000117498 584 ntBASIC10.7□□□□□ -0.7
Hmgb3O54879 Pcp2-203ENSMUST00000133459 470 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC10.7□□□□□ -0.7
Hmgb3O54879 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
Hmgb3O54879 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm33320-201ENSMUST00000192232 530 ntBASIC10.7□□□□□ -0.7
Hmgb3O54879 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm5628-201ENSMUST00000222318 1049 ntBASIC10.7□□□□□ -0.7
Hmgb3O54879 Dupd1-202ENSMUST00000224735 548 ntBASIC10.7□□□□□ -0.7
Hmgb3O54879 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Pcp2-201ENSMUST00000004749 495 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Wdr62-201ENSMUST00000108190 4742 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Pif1-202ENSMUST00000131483 3309 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Chrm1-202ENSMUST00000163785 6271 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Hmgb3O54879 Ccdc187-202ENSMUST00000217256 9411 ntAPPRIS ALT2 TSL 5 BASIC10.7□□□□□ -0.7
Hmgb3O54879 Ehbp1-202ENSMUST00000109563 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Mtnr1a-201ENSMUST00000067984 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Ogfod1-202ENSMUST00000093301 5141 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Tmem200a-203ENSMUST00000218232 3510 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Ltbp1-202ENSMUST00000112514 4870 ntAPPRIS ALT1 TSL 5 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Mbd3-202ENSMUST00000105347 914 ntTSL 2 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC10.69□□□□□ -0.7
Hmgb3O54879 Gm9719-201ENSMUST00000162765 543 ntBASIC10.69□□□□□ -0.7
Hmgb3O54879 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Mir8117-201ENSMUST00000184773 107 ntBASIC10.69□□□□□ -0.7
Hmgb3O54879 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC10.69□□□□□ -0.7
Hmgb3O54879 1700030N18Rik-201ENSMUST00000202497 966 ntBASIC10.69□□□□□ -0.7
Hmgb3O54879 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC10.69□□□□□ -0.7
Hmgb3O54879 AC155252.2-201ENSMUST00000226946 680 ntBASIC10.69□□□□□ -0.7
Hmgb3O54879 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Gm5466-201ENSMUST00000119395 1890 ntBASIC10.69□□□□□ -0.7
Hmgb3O54879 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
Hmgb3O54879 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 CT009757.3-201ENSMUST00000223367 2320 ntBASIC10.69□□□□□ -0.7
Hmgb3O54879 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Zfp646-201ENSMUST00000050383 6310 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Smarca2-216ENSMUST00000176769 5703 ntTSL 5 BASIC10.69□□□□□ -0.7
Hmgb3O54879 Decr2-201ENSMUST00000040907 2187 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Hsf4-206ENSMUST00000173859 1576 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
Hmgb3O54879 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Zfp125-201ENSMUST00000079237 2488 ntBASIC10.68□□□□□ -0.7
Hmgb3O54879 Nup62cl-201ENSMUST00000101212 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC10.68□□□□□ -0.7
Hmgb3O54879 Slc29a1-203ENSMUST00000097317 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Hmgb3O54879 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 189.1 ms