Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Gm42612-201ENSMUST00000197986 623 ntBASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gm43170-201ENSMUST00000199827 612 ntBASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gm6218-201ENSMUST00000219812 628 ntBASIC12.19□□□□□ -0.46
Trim39Q9ESN2 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Srd5a2-201ENSMUST00000043458 854 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Iqcm-203ENSMUST00000212704 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Net1-201ENSMUST00000091853 2680 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Trim39Q9ESN2 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gm9742-201ENSMUST00000165220 1553 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Syt7-205ENSMUST00000224135 1557 ntBASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Zfp125-201ENSMUST00000079237 2488 ntBASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Pik3r1-202ENSMUST00000055518 7113 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Olfr812-202ENSMUST00000203571 1232 ntAPPRIS P1 TSL 3 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Olfr222-201ENSMUST00000071943 1115 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Odf3l2-201ENSMUST00000095464 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gm16534-201ENSMUST00000149300 1492 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Zfp575-201ENSMUST00000094705 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Tjap1-203ENSMUST00000180283 2368 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Trim39Q9ESN2 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Zyg11a-201ENSMUST00000043793 2289 ntAPPRIS P2 TSL 5 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Zfp354c-202ENSMUST00000109135 5325 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Gm12485-201ENSMUST00000119641 291 ntBASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Synj2bp-205ENSMUST00000169158 691 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Gm5626-201ENSMUST00000222151 1058 ntBASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Gm3695-201ENSMUST00000087222 1009 ntBASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC12.17□□□□□ -0.46
Trim39Q9ESN2 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms