Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Trp53-202ENSMUST00000108657 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gm11978-201ENSMUST00000122315 466 ntBASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gm18827-201ENSMUST00000188341 790 ntBASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gm38241-201ENSMUST00000192641 898 ntBASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gm19184-201ENSMUST00000196798 928 ntBASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Grin1-202ENSMUST00000114307 4127 ntTSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Apol9b-201ENSMUST00000109775 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Sec23b-201ENSMUST00000028916 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Mdm2-202ENSMUST00000105263 3145 ntTSL 5 BASIC14.55□□□□□ -0.08
Ushbp1Q8R370 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Map1lc3b-201ENSMUST00000034270 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Wfdc9-202ENSMUST00000109335 547 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Arpc3-203ENSMUST00000111713 708 ntTSL 3 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Gm14350-201ENSMUST00000116642 640 ntBASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 AC122305.4-201ENSMUST00000216159 1206 ntBASIC14.54□□□□□ -0.08
Ushbp1Q8R370 AC155237.1-201ENSMUST00000226196 1279 ntBASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Ptk2-201ENSMUST00000110036 4184 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Eya1-203ENSMUST00000168081 4366 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Phka1-203ENSMUST00000113611 6064 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Phka1-205ENSMUST00000120270 6064 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Myh7-201ENSMUST00000102803 6135 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Ppp4r3b-202ENSMUST00000102856 2410 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Hspa4-201ENSMUST00000020630 4618 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Ints7-201ENSMUST00000045450 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ushbp1Q8R370 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Espn-213ENSMUST00000105659 3595 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Ccdc71-201ENSMUST00000061209 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Tmc6-201ENSMUST00000026659 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Bud13-201ENSMUST00000074957 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 P2rx6-201ENSMUST00000023441 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Gli2-201ENSMUST00000062483 6637 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 A430093F15Rik-204ENSMUST00000186596 2115 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Gm38355-201ENSMUST00000192514 1570 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Mir3102-201ENSMUST00000175555 104 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Gm27331-201ENSMUST00000183705 60 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Gm27516-201ENSMUST00000184237 98 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Mir8109-201ENSMUST00000184375 117 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 2900093K20Rik-201ENSMUST00000190930 567 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Gm43822-201ENSMUST00000200285 476 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Crip2-206ENSMUST00000200380 864 ntTSL 3 BASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Gm18473-201ENSMUST00000220543 868 ntBASIC14.53□□□□□ -0.08
Ushbp1Q8R370 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 67 ms