Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm18624-201ENSMUST00000220966 658 ntBASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Gm2423-201ENSMUST00000074863 733 ntBASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Gm43273-201ENSMUST00000199649 2594 ntBASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Krt35-201ENSMUST00000103127 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Ugt1a6a-201ENSMUST00000014263 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Ccdc40Q8BI79 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Ccdc40Q8BI79 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ccdc40Q8BI79 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ccdc40Q8BI79 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.58□□□□□ -0.23
Ccdc40Q8BI79 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ccdc40Q8BI79 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC13.58□□□□□ -0.23
Ccdc40Q8BI79 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.23
Ccdc40Q8BI79 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 AC155286.1-201ENSMUST00000218632 448 ntBASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Gm5626-201ENSMUST00000222151 1058 ntBASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Gm15823-201ENSMUST00000064305 670 ntBASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Siglecg-201ENSMUST00000005592 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Gm26735-201ENSMUST00000180992 2649 ntTSL 5 BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Rbm8a-206ENSMUST00000200647 2620 ntTSL 2 BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Ccdc40Q8BI79 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Gm43051-201ENSMUST00000201096 2678 ntBASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Rhbdd3-203ENSMUST00000109878 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Rab11fip5-201ENSMUST00000060837 4035 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Rn7sk-201ENSMUST00000083103 331 ntBASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Gm26315-201ENSMUST00000083890 321 ntBASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Lrp2bp-202ENSMUST00000110380 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Gm9755-201ENSMUST00000032981 1356 ntBASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Ccdc40Q8BI79 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.57□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms