Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Gm14109-201ENSMUST00000118814 309 ntBASIC16.73■□□□□ 0.27
Trim28Q62318 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC16.73■□□□□ 0.27
Trim28Q62318 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC16.73■□□□□ 0.27
Trim28Q62318 Gm13570-201ENSMUST00000140763 309 ntBASIC16.73■□□□□ 0.27
Trim28Q62318 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC16.73■□□□□ 0.27
Trim28Q62318 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim28Q62318 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Trim28Q62318 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Trim28Q62318 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim28Q62318 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC16.72■□□□□ 0.27
Trim28Q62318 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Trim28Q62318 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Gm43858-201ENSMUST00000199418 1778 ntBASIC16.72■□□□□ 0.27
Trim28Q62318 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Rubcn-204ENSMUST00000119810 3371 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Trim28Q62318 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Gm13394-201ENSMUST00000121658 1000 ntBASIC16.72■□□□□ 0.27
Trim28Q62318 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Gm3096-201ENSMUST00000185770 364 ntBASIC16.72■□□□□ 0.27
Trim28Q62318 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC16.72■□□□□ 0.27
Trim28Q62318 AC126253.1-202ENSMUST00000226732 835 ntBASIC16.72■□□□□ 0.27
Trim28Q62318 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC16.72■□□□□ 0.27
Trim28Q62318 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Gm10782-202ENSMUST00000223775 1480 ntBASIC16.72■□□□□ 0.27
Trim28Q62318 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
Trim28Q62318 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Trim28Q62318 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Mpp3-202ENSMUST00000100400 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
Trim28Q62318 Spry2-201ENSMUST00000022709 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Ankrd34a-201ENSMUST00000058943 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Rpn1-201ENSMUST00000032143 3633 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
Trim28Q62318 Fam166b-203ENSMUST00000107929 865 ntAPPRIS P5 TSL 5 BASIC16.71■□□□□ 0.27
Trim28Q62318 Cspp1-202ENSMUST00000117415 1272 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
Trim28Q62318 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Gm829-202ENSMUST00000146622 722 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC16.71■□□□□ 0.27
Trim28Q62318 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC16.71■□□□□ 0.27
Trim28Q62318 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC16.71■□□□□ 0.27
Trim28Q62318 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC16.71■□□□□ 0.27
Trim28Q62318 Gm9176-201ENSMUST00000219955 1120 ntBASIC16.71■□□□□ 0.27
Trim28Q62318 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Mtus2-202ENSMUST00000085554 1009 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Gm45643-201ENSMUST00000211364 1484 ntBASIC16.71■□□□□ 0.27
Trim28Q62318 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC16.71■□□□□ 0.27
Trim28Q62318 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Trim28Q62318 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Trim28Q62318 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Trim28Q62318 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Gm3052-202ENSMUST00000188254 2224 ntBASIC16.7■□□□□ 0.26
Trim28Q62318 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Timp2-201ENSMUST00000017610 3709 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
Trim28Q62318 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Trim28Q62318 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Trim28Q62318 Gm15276-201ENSMUST00000145953 498 ntBASIC16.7■□□□□ 0.26
Trim28Q62318 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC16.7■□□□□ 0.26
Trim28Q62318 Gm8494-201ENSMUST00000178171 1233 ntBASIC16.7■□□□□ 0.26
Trim28Q62318 Gm4819-201ENSMUST00000182170 1009 ntBASIC16.7■□□□□ 0.26
Trim28Q62318 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC16.7■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms