Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 AC166491.1-201ENSMUST00000227053 2308 ntBASIC11.09□□□□□ -0.63
Col8a1Q00780 Dhdds-204ENSMUST00000105887 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
Col8a1Q00780 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC11.09□□□□□ -0.63
Col8a1Q00780 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
Col8a1Q00780 Mocs2-208ENSMUST00000166176 1855 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 A230077H06Rik-201ENSMUST00000188579 2918 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Gm25214-201ENSMUST00000104573 129 ntBASIC11.08□□□□□ -0.64
Col8a1Q00780 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Gm6447-201ENSMUST00000118905 835 ntBASIC11.08□□□□□ -0.64
Col8a1Q00780 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Gm9550-201ENSMUST00000161130 862 ntBASIC11.08□□□□□ -0.64
Col8a1Q00780 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Gm44136-201ENSMUST00000203819 1106 ntBASIC11.08□□□□□ -0.64
Col8a1Q00780 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Acot6-202ENSMUST00000222921 3622 ntBASIC11.08□□□□□ -0.64
Col8a1Q00780 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC11.08□□□□□ -0.64
Col8a1Q00780 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Prkcq-201ENSMUST00000028118 3583 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Mapk7-202ENSMUST00000101085 3254 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Col8a1Q00780 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Bend7-201ENSMUST00000056914 2302 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm43081-201ENSMUST00000199082 1380 ntBASIC11.07□□□□□ -0.64
Col8a1Q00780 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm19863-201ENSMUST00000192480 2218 ntBASIC11.07□□□□□ -0.64
Col8a1Q00780 C77080-203ENSMUST00000106051 5049 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm11637-201ENSMUST00000120601 592 ntBASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm13813-201ENSMUST00000120998 787 ntBASIC11.07□□□□□ -0.64
Col8a1Q00780 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm26361-201ENSMUST00000158868 186 ntBASIC11.07□□□□□ -0.64
Col8a1Q00780 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm45770-201ENSMUST00000212105 616 ntBASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Igha-202ENSMUST00000194738 2540 ntAPPRIS P5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Oxa1l-201ENSMUST00000000985 2538 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Nagk-202ENSMUST00000113850 1918 ntTSL 5 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Dnajb4-204ENSMUST00000144950 2459 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Col8a1Q00780 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC11.07□□□□□ -0.64
Col8a1Q00780 Rbmx2-201ENSMUST00000033433 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Col8a1Q00780 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Col8a1Q00780 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC11.06□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms