Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Rbm47-206ENSMUST00000200775 3180 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Jazf1-201ENSMUST00000074541 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Tcf3-205ENSMUST00000105341 2451 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Gm23200-201ENSMUST00000104379 132 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC12.29□□□□□ -0.44
Cdx2P43241 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Gm13996-201ENSMUST00000118456 430 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Gm11331-201ENSMUST00000119764 288 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Gm24514-201ENSMUST00000174961 285 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC12.29□□□□□ -0.44
Cdx2P43241 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Gm43378-201ENSMUST00000199336 582 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC12.29□□□□□ -0.44
Cdx2P43241 Brsk1-205ENSMUST00000206024 1216 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Pjvk-201ENSMUST00000099986 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Grin1-204ENSMUST00000114310 4276 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Gm2673-201ENSMUST00000120958 1608 ntBASIC12.29□□□□□ -0.44
Cdx2P43241 Sbno2-209ENSMUST00000219260 4850 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Osbpl10-204ENSMUST00000182384 2158 ntTSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
Cdx2P43241 Aptx-201ENSMUST00000030119 5250 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Cdx2P43241 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Cdx2P43241 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
Cdx2P43241 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC12.28□□□□□ -0.44
Cdx2P43241 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC12.28□□□□□ -0.44
Cdx2P43241 Cabp2-202ENSMUST00000159556 781 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm6652-201ENSMUST00000186414 1070 ntBASIC12.28□□□□□ -0.44
Cdx2P43241 Gm19931-201ENSMUST00000198920 368 ntBASIC12.28□□□□□ -0.44
Cdx2P43241 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC12.28□□□□□ -0.44
Cdx2P43241 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm45224-201ENSMUST00000208203 414 ntBASIC12.28□□□□□ -0.44
Cdx2P43241 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm8959-201ENSMUST00000213150 571 ntBASIC12.28□□□□□ -0.44
Cdx2P43241 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Chchd3-202ENSMUST00000115091 1363 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm45495-201ENSMUST00000200940 1700 ntBASIC12.28□□□□□ -0.44
Cdx2P43241 Kyat1-204ENSMUST00000113661 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Epb41-208ENSMUST00000105981 5303 ntAPPRIS P3 TSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
Cdx2P43241 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC12.28□□□□□ -0.44
Cdx2P43241 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC12.28□□□□□ -0.44
Cdx2P43241 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC12.28□□□□□ -0.44
Cdx2P43241 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC12.27□□□□□ -0.44
Cdx2P43241 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx2P43241 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx2P43241 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.44
Cdx2P43241 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC12.27□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 48.8 ms