Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col18a1P39061 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Olfr1047-201ENSMUST00000099901 960 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col18a1P39061 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col18a1P39061 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col18a1P39061 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC16.74■□□□□ 0.27
Col18a1P39061 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Col18a1P39061 Rad51c-201ENSMUST00000007790 1632 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Sparc-207ENSMUST00000213866 1366 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 Klk6-201ENSMUST00000107966 1095 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC16.74■□□□□ 0.27
Col18a1P39061 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC16.74■□□□□ 0.27
Col18a1P39061 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 Gm40879-201ENSMUST00000220759 612 ntBASIC16.74■□□□□ 0.27
Col18a1P39061 Mgp-201ENSMUST00000032342 617 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 BC030499-201ENSMUST00000046361 959 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Col18a1P39061 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.74■□□□□ 0.27
Col18a1P39061 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Col18a1P39061 Ankrd53-201ENSMUST00000014891 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Col18a1P39061 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Gm25063-201ENSMUST00000104666 94 ntBASIC16.73■□□□□ 0.27
Col18a1P39061 Slc35c2-204ENSMUST00000109300 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Smim20-201ENSMUST00000147148 922 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC16.73■□□□□ 0.27
Col18a1P39061 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC16.73■□□□□ 0.27
Col18a1P39061 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC16.73■□□□□ 0.27
Col18a1P39061 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC16.73■□□□□ 0.27
Col18a1P39061 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Usp16-201ENSMUST00000026710 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
Col18a1P39061 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col18a1P39061 Gtf3c5-201ENSMUST00000028157 2739 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Col18a1P39061 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
Col18a1P39061 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC16.72■□□□□ 0.27
Col18a1P39061 Gm7137-201ENSMUST00000180161 711 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col18a1P39061 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC16.72■□□□□ 0.27
Col18a1P39061 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Ugcg-201ENSMUST00000030074 4012 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Asl-202ENSMUST00000159619 2088 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Col18a1P39061 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC16.72■□□□□ 0.27
Col18a1P39061 Tcf4-230ENSMUST00000201205 2270 ntTSL 5 BASIC16.72■□□□□ 0.27
Col18a1P39061 Gm18198-201ENSMUST00000204986 1551 ntBASIC16.72■□□□□ 0.27
Col18a1P39061 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
Col18a1P39061 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Gm5419-201ENSMUST00000119301 527 ntBASIC16.72■□□□□ 0.27
Col18a1P39061 4930502E09Rik-201ENSMUST00000126016 755 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC16.72■□□□□ 0.27
Col18a1P39061 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col18a1P39061 Taar8c-201ENSMUST00000170267 1035 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col18a1P39061 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC16.72■□□□□ 0.27
Col18a1P39061 Gm45500-201ENSMUST00000211676 803 ntBASIC16.72■□□□□ 0.27
Col18a1P39061 Taar8a-201ENSMUST00000051133 1035 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
Col18a1P39061 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Mks1-201ENSMUST00000038196 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
Col18a1P39061 Gm28386-201ENSMUST00000189147 1849 ntBASIC16.71■□□□□ 0.27
Col18a1P39061 Cyth1-204ENSMUST00000106305 3179 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col18a1P39061 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms