Protein–RNA interactions for Protein: P31313

Hoxc11, Homeobox protein Hox-C11, mousemouse

Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxc11P31313 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Gm37008-201ENSMUST00000195712 319 ntBASIC12.6□□□□□ -0.39
Hoxc11P31313 Gm17823-201ENSMUST00000217830 1006 ntBASIC12.6□□□□□ -0.39
Hoxc11P31313 AC144543.1-201ENSMUST00000221840 1064 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 AC154171.1-201ENSMUST00000224610 643 ntBASIC12.6□□□□□ -0.39
Hoxc11P31313 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC12.6□□□□□ -0.39
Hoxc11P31313 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC12.6□□□□□ -0.39
Hoxc11P31313 Ccdc22-201ENSMUST00000033483 2353 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Gstcd-202ENSMUST00000080583 2394 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Hoxc11P31313 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Gm18263-201ENSMUST00000220846 1928 ntBASIC12.6□□□□□ -0.39
Hoxc11P31313 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Inpp5e-205ENSMUST00000145701 4147 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Arntl-206ENSMUST00000211770 2464 ntTSL 5 BASIC12.6□□□□□ -0.39
Hoxc11P31313 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
Hoxc11P31313 Gucy1a2-201ENSMUST00000115733 2243 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
Hoxc11P31313 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC12.6□□□□□ -0.39
Hoxc11P31313 Fsd1-201ENSMUST00000011733 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Slc44a4-201ENSMUST00000007249 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Neurod6-201ENSMUST00000044767 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Mir686-201ENSMUST00000102174 109 ntBASIC12.59□□□□□ -0.39
Hoxc11P31313 Gm22018-201ENSMUST00000104357 131 ntBASIC12.59□□□□□ -0.39
Hoxc11P31313 Gm6447-201ENSMUST00000118905 835 ntBASIC12.59□□□□□ -0.39
Hoxc11P31313 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC12.59□□□□□ -0.39
Hoxc11P31313 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Comt-201ENSMUST00000000335 1178 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
Hoxc11P31313 Unc45bos-201ENSMUST00000156395 1306 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Slc16a2-201ENSMUST00000042664 4152 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Hoxc11P31313 Sgk1-213ENSMUST00000164659 2602 ntTSL 5 BASIC12.58□□□□□ -0.39
Hoxc11P31313 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.58□□□□□ -0.39
Hoxc11P31313 Wwox-201ENSMUST00000004756 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
Hoxc11P31313 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Rasgrp2-207ENSMUST00000113475 573 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Men1-210ENSMUST00000166909 295 ntTSL 3 BASIC12.58□□□□□ -0.4
Hoxc11P31313 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Gm25927-201ENSMUST00000175058 117 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Gm38161-201ENSMUST00000195344 576 ntTSL 2 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Gm43118-201ENSMUST00000199149 775 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 AC116503.1-201ENSMUST00000215445 2192 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 AC134254.1-201ENSMUST00000221362 167 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 Napsa-201ENSMUST00000002274 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 AC154276.1-201ENSMUST00000228874 1299 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Olfr569-201ENSMUST00000078191 945 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Olfr582-201ENSMUST00000098212 960 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Gm8706-201ENSMUST00000197372 1491 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Cluh-202ENSMUST00000117818 4284 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
Hoxc11P31313 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.58□□□□□ -0.4
Hoxc11P31313 Rlbp1-201ENSMUST00000053718 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Hoxc11P31313 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms