Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Gm10359-201ENSMUST00000180167 1002 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm12033-201ENSMUST00000180654 1002 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm5559-201ENSMUST00000180755 1002 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm4335-201ENSMUST00000182581 1004 ntBASIC12.43□□□□□ -0.42
Msx1P13297 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC12.43□□□□□ -0.42
Msx1P13297 Gm38144-201ENSMUST00000192790 465 ntBASIC12.43□□□□□ -0.42
Msx1P13297 1810059H22Rik-208ENSMUST00000204941 642 ntTSL 2 BASIC12.43□□□□□ -0.42
Msx1P13297 Fam24a-202ENSMUST00000207439 711 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 CT025525.2-201ENSMUST00000227743 423 ntBASIC12.43□□□□□ -0.42
Msx1P13297 1810062G17Rik-201ENSMUST00000029268 911 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Olfr1447-201ENSMUST00000071484 1113 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Msx1P13297 Olfr1446-201ENSMUST00000081236 1044 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Msx1P13297 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 mt-Nd3-201ENSMUST00000082411 348 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Msx1P13297 Tnrc6c-201ENSMUST00000026658 8724 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 Dnm1-201ENSMUST00000078352 3246 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC12.43□□□□□ -0.42
Msx1P13297 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Enc1-201ENSMUST00000041623 4737 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC12.43□□□□□ -0.42
Msx1P13297 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Msx1P13297 Herpud1-205ENSMUST00000161576 1952 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Gm9924-202ENSMUST00000192760 2311 ntBASIC12.43□□□□□ -0.42
Msx1P13297 1500009C09Rik-202ENSMUST00000143238 1552 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Msx1P13297 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Msx1P13297 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Msx1P13297 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC12.42□□□□□ -0.42
Msx1P13297 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Tcf12-201ENSMUST00000034755 4621 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 AC155298.2-201ENSMUST00000225485 6226 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Msx1P13297 Rpl9-203ENSMUST00000120094 680 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
Msx1P13297 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Gm13505-201ENSMUST00000121666 817 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC12.42□□□□□ -0.42
Msx1P13297 Gm27231-201ENSMUST00000185191 551 ntTSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 1700065O20Rik-201ENSMUST00000186872 710 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Gm43758-201ENSMUST00000199500 367 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Gm18753-201ENSMUST00000201000 566 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Gm3786-201ENSMUST00000202659 378 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Gm17870-201ENSMUST00000219489 1174 ntBASIC12.42□□□□□ -0.42
Msx1P13297 AC173345.3-201ENSMUST00000221245 1093 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Olfr1385-201ENSMUST00000071807 930 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Msx1P13297 1700007G11Rik-201ENSMUST00000080333 861 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Ntrk2-209ENSMUST00000225950 2640 ntBASIC12.42□□□□□ -0.42
Msx1P13297 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC12.42□□□□□ -0.42
Msx1P13297 Pdcd6-203ENSMUST00000222759 1376 ntAPPRIS ALT1 TSL 2 BASIC12.42□□□□□ -0.42
Msx1P13297 Asb11-201ENSMUST00000033755 1369 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
Msx1P13297 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msx1P13297 Rhog-202ENSMUST00000106923 1321 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Msx1P13297 Slc38a10-204ENSMUST00000103018 4578 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msx1P13297 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC12.41□□□□□ -0.42
Msx1P13297 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msx1P13297 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Msx1P13297 Nkain3-201ENSMUST00000102998 3098 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Msx1P13297 Mir877-201ENSMUST00000104738 85 ntBASIC12.41□□□□□ -0.42
Msx1P13297 Gm14435-201ENSMUST00000108995 643 ntAPPRIS P5 TSL 2 BASIC12.41□□□□□ -0.42
Msx1P13297 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC12.41□□□□□ -0.42
Msx1P13297 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms