Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Rapsn-202ENSMUST00000111445 1450 ntTSL 5 BASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Nupl1-206ENSMUST00000225111 2936 ntBASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Matn2-203ENSMUST00000226766 3252 ntBASIC11.7□□□□□ -0.54
Pcdh1F7BJK1 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Urgcp-204ENSMUST00000120306 3972 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Dnajc14-207ENSMUST00000219508 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 D830024N08Rik-201ENSMUST00000212132 2899 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Qdpr-202ENSMUST00000117425 1231 ntTSL 3 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 AC156504.2-201ENSMUST00000213800 711 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Cerk-203ENSMUST00000156546 2162 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Nacc1-201ENSMUST00000001975 4300 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Atat1-212ENSMUST00000141662 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Gm44094-201ENSMUST00000204703 2030 ntBASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Mast3-203ENSMUST00000211948 4251 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
Pcdh1F7BJK1 Ctbp2-209ENSMUST00000166439 1997 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm43061-201ENSMUST00000198850 2241 ntBASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm21038-201ENSMUST00000222205 1383 ntBASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm3693-201ENSMUST00000182077 2865 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm11524-201ENSMUST00000119349 807 ntBASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm21854-201ENSMUST00000179901 471 ntBASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm27306-201ENSMUST00000183970 107 ntBASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm32926-202ENSMUST00000215162 1176 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 AC238811.1-201ENSMUST00000225302 441 ntBASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Tmem86b-201ENSMUST00000055085 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gadl1-203ENSMUST00000121770 1763 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
Pcdh1F7BJK1 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Pcdh1F7BJK1 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Pcdh1F7BJK1 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Pcdh1F7BJK1 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Pcdh1F7BJK1 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Pcdh1F7BJK1 Dcun1d3-206ENSMUST00000207233 2917 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
Pcdh1F7BJK1 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms