Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Crry-ps-201ENSMUST00000079090 1309 ntBASIC15.14■□□□□ 0.01
Scn11aQ9R053 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.14■□□□□ 0.01
Scn11aQ9R053 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Gm9211-201ENSMUST00000182882 975 ntBASIC15.14■□□□□ 0.01
Scn11aQ9R053 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
Scn11aQ9R053 AC154276.3-201ENSMUST00000227643 998 ntBASIC15.14■□□□□ 0.01
Scn11aQ9R053 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Defb36-201ENSMUST00000058086 468 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
Scn11aQ9R053 Gm18626-201ENSMUST00000221512 1409 ntBASIC15.14■□□□□ 0.01
Scn11aQ9R053 Retreg1-206ENSMUST00000228306 1430 ntBASIC15.14■□□□□ 0.01
Scn11aQ9R053 Gm3052-202ENSMUST00000188254 2224 ntBASIC15.14■□□□□ 0.01
Scn11aQ9R053 Gm12015-201ENSMUST00000117065 843 ntBASIC15.13■□□□□ 0.01
Scn11aQ9R053 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Gm32999-201ENSMUST00000192693 562 ntBASIC15.13■□□□□ 0.01
Scn11aQ9R053 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Prm3-201ENSMUST00000050864 410 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Gm45495-201ENSMUST00000200940 1700 ntBASIC15.13■□□□□ 0.01
Scn11aQ9R053 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Gm13296-201ENSMUST00000117854 997 ntBASIC15.13■□□□□ 0.01
Scn11aQ9R053 Gm8365-201ENSMUST00000197334 648 ntBASIC15.13■□□□□ 0.01
Scn11aQ9R053 Ccdc153-202ENSMUST00000213891 792 ntAPPRIS ALT2 TSL 3 BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Scn11aQ9R053 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Slc7a6-201ENSMUST00000034378 3750 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gm24231-201ENSMUST00000104315 133 ntBASIC15.12■□□□□ 0.01
Scn11aQ9R053 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gm16481-201ENSMUST00000119074 1227 ntBASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gm15131-201ENSMUST00000119124 595 ntBASIC15.12■□□□□ 0.01
Scn11aQ9R053 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gm5070-201ENSMUST00000177599 862 ntBASIC15.12■□□□□ 0.01
Scn11aQ9R053 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 CT025694.1-201ENSMUST00000226188 934 ntBASIC15.12■□□□□ 0.01
Scn11aQ9R053 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC15.12■□□□□ 0.01
Scn11aQ9R053 Gm26519-201ENSMUST00000181193 2249 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Nudt6-207ENSMUST00000141438 899 ntTSL 2 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm28882-201ENSMUST00000185504 314 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm3898-202ENSMUST00000216905 328 ntTSL 2 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 AC132901.1-201ENSMUST00000224345 508 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gm10312-201ENSMUST00000078515 489 ntBASIC15.11■□□□□ 0.01
Scn11aQ9R053 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Scn11aQ9R053 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms