Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 AC126253.1-201ENSMUST00000227974 824 ntBASIC13.34□□□□□ -0.27
Vps28Q9D1C8 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 C130012C08Rik-201ENSMUST00000194287 3665 ntBASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Brd4-201ENSMUST00000003726 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Shank2-203ENSMUST00000105902 8988 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gm45242-201ENSMUST00000210666 2129 ntBASIC13.34□□□□□ -0.27
Vps28Q9D1C8 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 AC131068.2-201ENSMUST00000226175 1453 ntBASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Bptf-202ENSMUST00000106762 11847 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Vps28Q9D1C8 Gm43134-201ENSMUST00000199434 1886 ntBASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
Vps28Q9D1C8 Gm14608-201ENSMUST00000120030 1553 ntBASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gm2231-201ENSMUST00000125661 612 ntBASIC13.33□□□□□ -0.28
Vps28Q9D1C8 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gm27682-201ENSMUST00000183930 110 ntBASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gm9728-201ENSMUST00000200197 1055 ntBASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 4921530L21Rik-201ENSMUST00000045892 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Pik3ip1-201ENSMUST00000045153 2573 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Lrig2-205ENSMUST00000198332 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gm43423-201ENSMUST00000198390 2094 ntBASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Fmo1-202ENSMUST00000111518 1506 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Vps28Q9D1C8 Gm12846-201ENSMUST00000120431 1373 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 1110002L01Rik-202ENSMUST00000168012 3569 ntTSL 2 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Gm5466-201ENSMUST00000119395 1890 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Itga6-202ENSMUST00000112101 4156 ntAPPRIS ALT1 TSL 5 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Cacnb2-202ENSMUST00000114719 2117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Gm12539-201ENSMUST00000121549 1098 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Mir7221-201ENSMUST00000184009 72 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Gm28693-202ENSMUST00000190758 331 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Gm43438-201ENSMUST00000198133 379 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Gm42839-201ENSMUST00000198978 525 ntTSL 2 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 AC135669.1-202ENSMUST00000216742 540 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 AC154276.1-201ENSMUST00000228874 1299 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Cox7a2-201ENSMUST00000034881 659 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Gm10268-201ENSMUST00000085340 555 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Dctn4-202ENSMUST00000223590 1530 ntBASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Ctsl-201ENSMUST00000021933 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Kcnk13-201ENSMUST00000049788 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Adamtsl4-202ENSMUST00000117782 4036 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
Vps28Q9D1C8 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 60.9 ms