Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lsm1Q8VC85 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Lsm1Q8VC85 Cavin1-201ENSMUST00000060792 3491 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Cdk10-212ENSMUST00000213005 1580 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Gnb2-209ENSMUST00000143495 1285 ntTSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Spag7-201ENSMUST00000018431 1159 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Nek1-201ENSMUST00000034065 5401 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Tubb2a-201ENSMUST00000056427 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Sall3-201ENSMUST00000057950 6886 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
Lsm1Q8VC85 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Gm42840-201ENSMUST00000200303 2251 ntBASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Vangl1-201ENSMUST00000029453 6531 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Mir686-201ENSMUST00000102174 109 ntBASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Gm38297-201ENSMUST00000195122 1057 ntBASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Gm44069-201ENSMUST00000204898 506 ntBASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Gm42303-201ENSMUST00000209960 1170 ntTSL 5 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 AC238811.3-201ENSMUST00000225422 709 ntBASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Lsm1Q8VC85 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Tppp-201ENSMUST00000022057 5090 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC12.46□□□□□ -0.42
Lsm1Q8VC85 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Traf6-201ENSMUST00000004949 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Eef1d-206ENSMUST00000109975 2842 ntTSL 5 BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Gm6210-201ENSMUST00000204734 1942 ntBASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Pex19-201ENSMUST00000075895 1917 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Parp16-201ENSMUST00000069000 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.45□□□□□ -0.42
Lsm1Q8VC85 Ctnnbip1-202ENSMUST00000105692 634 ntAPPRIS P1 TSL 1 (best) BASIC12.45□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 64.3 ms